math/R-cran-gss: Update to 2.2.8

math/R-cran-gss: Update to 2.2.7

math/R-cran-gss: Update to 2.2.6

math/R-cran-gss: Update to 2.2.5

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/R-cran-gss: Update to 2.2.4

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/R-cran-gss: Update to 2.2.3

Remove # $FreeBSD$ from Makefiles.

- Update to 2.2.2

- Update to 2.2.0

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

- Update to 2.1.12
- Take maintainership

Return dbn's ports to the pool after safekeeping his commit bit.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

math/R-cran-gss: updated to version 2.1-9

 - removed PORTREVISION due to version bump
 - update website URL to align with CRAN package
 - changelog:
   - R: Reworked ssllrm suite to add qd.wt.
   - man: Minor edit to reflect changes in R.
   - src: i) Changes and bug fixes in llrmnewton.  ii) Minor edit in
     cdennewton.

Generated by:	portcran (0.1.8)

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

math/R-cran-gss: updated to version 2.1-7

 - updated license to align with CRAN package
 - changelog:
   - R: i) Added mkran1 and modified mkran to allow for multiple terms of
     random effects.  ii) Added predict1.ssanova to allow for the
     evaluation of f(x1)-f(x2) along with standard errors.  iii) Bug fixes
     in project.ssanova and summary.ssanova involving random effects.
   - man: Updated to reflect changes in R.

Generated by:	portcran (0.1.5)

math/R-cran-gss: updated to version 2.1-6

 - mark port as needing to compile

Generated by:	portcran (0.1.1)

math/R-cran-gss: update to 2.1-5.

ChangeLog:
 * NAMESPACE: Added 'importFrom(sats, ...)'.

Update math/R-cran-gss to 2.1-4.

ChangeLog:
 * R: Along with a bug fix, edited utility functions for the
      nbinomial family in the gssanova suite, eliminating unnecessary
      subtractions to preserve numerical precision.

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

Update math/R-cran-gss to 2.1-3.

ChangeLog:
 * R: Edited utility functions for the binomial family in the
        gssanova suite, eliminating unnecessary subtractions to preserve
        numerical precision.

Update math/R-cran-gss to 2.1-2.

ChangeLog:
 * inst: created the directory and added CITATION.
 * man: Updated references

Update math/R-cran-gss to 2.1-0.

ChangeLog:
* R:
  i) Tuned Newton iteration algorithms in ngreg and ngreg.proj.
  ii) Bug fixes in routines involving univariate minimization via
        nlm0.
  iii) Minor changes in makedata.x's.

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)

Update math/R-cran-gss to 2.1-0.

ChangeLog:
 * R: i) Changed time domain specification in sshzd/sshzd1.
      ii) Removed from sshzd1 the option of external rho.
  * man: Minor edit in sshzd.Rd.

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen

Update math/R-cran-gss to 2.0.16.

ChangeLog:
* R: i) Bug fix in survexp.sshzd.  ii) Modified default values of
        qdsz.depth in ssden.
* man: i) Updated references.  ii) Added note in ssden.Rd.

Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota

Update math/R-cran-gss to 2.0-15.

ChangeLog:

 * R: Bug fixes in summary.gssanova, summary.ssanova, and
      summary.ssanova9.

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota

Update math/R-cran-gss to 2.0-14.

ChangeLog:
        * R: Bug fixes in ssden1, sscden, sscden1 suites.

Approved by:	eadler.bdrewery (mentors, implicit)

Add new port math/R-cran-gss (2.0-13).

There is an existing port (finance/gss) with possible distfile conflict however
upstream is not actively maintained and CRAN packages have a slightly different
naming scheme making a future distfiles conflict unlikely.

Approved by:	eadler,bdrewery (mentors, implicit)