Fityk is a program for nonlinear fitting of analytical functions
(especially peak-shaped) to data (usually experimental data). There are
also people using it only to display data or to remove baseline from
data.
It is reported to be used in crystallography, chromatography,
photoluminescence, infrared and Raman spectroscopy and other fields.
Fityk knows about common peak-shaped functions (Gaussian, Lorentzian,
Voigt, Pearson VII, bifurcated Gaussian, EMG, Doniach-Sunjic, etc.) and
polynomials. It also supports user-defined functions.
Fityk offers intuitive graphical interface (and also command line
interface), variouse optimization methods (standard Marquardt
least-square algorithm, Genetic Algorithms, Nelder-Mead simplex),
equality constraints, modelling error of x coordinate of points (eg.
zero-shift of instrument), handling series of datasets, automation of
common tasks with scripts, and more.
WWW: http://fityk.nieto.pl/
===> The following configuration options are available for fityk-1.3.1_9:
DOCS=on: Build and/or install documentation
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
Remove expired ports:
2019-09-04 devel/ace+tao-doc: Broken for more than 6 months
2019-09-04 devel/dfmt: Broken for more than 6 months
2019-09-04 devel/ignition-transport: Broken for more than 6 months
2019-09-04 devel/spin: Broken for more than 6 months
2019-09-04 editors/dexed: Depends on expiring devel/dfmt
2019-09-04 editors/p5-Padre: Depends on expiring x11-toolkits/p5-Wx
2019-09-04 emulators/qemu2: Latest 3.X branch is in ports tree
2019-09-04 games/asc: Broken for more than 6 months
2019-09-04 games/slade: Broken for more than 6 months
2019-09-04 graphics/gimp-wavelet-decompose-plugin: Broken for more than 6 months
2019-09-04 graphics/py-pyembree: Depends on expiring graphics/embree
2019-09-04 irc/irssi-otr: Broken for more than 6 months
2019-09-04 mail/p5-Mail-ClamAV: Broken for more than 6 months
2019-09-04 mail/qmail-ldap: Broken for more than 6 months
(Only the first 15 lines of the commit message are shown above )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above )
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
math/fityk: unbreak build on 8.x
r385070 exposed another issue:
In file included from ceria.cpp:4:0:
ceria.h:52:23: error: 'FILE' was not declared in this scope
CelFile read_cel_file(FILE* f);
^
ceria.h:52:29: error: 'f' was not declared in this scope
CelFile read_cel_file(FILE* f);
^
ceria.h:53:41: error: 'FILE' has not been declared
void write_cel_file(CelFile const& cel, FILE* f);
^
ceria.cpp: In function 'CelFile read_cel_file(FILE*)':
ceria.cpp:719:30: error: 'CelFile read_cel_file(FILE*)' redeclared as different
kind of symbol
CelFile read_cel_file(FILE *f)
^
In file included from ceria.cpp:4:0:
ceria.h:52:9: error: previous declaration of 'CelFile read_cel_file'
CelFile read_cel_file(FILE* f);
^
Reported by: pkg-fallout
Approved by: portmgr blanket
math/fityk: unbreak build on 8.x/9.x (gcc 4.8)
Add -std=c++11 to fix
/usr/local/include/wx-3.0/wx/strvararg.h:25:27: error: type_traits: No such
file or directory
which itself exposes
guess.cpp:20:7: error: unknown type name 'array'
const array<string, 3> Guess::linear_traits =
^
sidebar.cpp:900:52: error: invalid suffix on literal; C++11 requires a space
between
literal and identifier [-Wreserved-user-defined-literal]
+ s2wx(format1<realt, 30>("%.10"REALT_LENGTH_MOD"g", a)));
^
Reported by: pkg-fallout
Approved by: portmgr blanket
MFH: 2015Q2 (only USES due to lack of r383466)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
When linking a library libA with a library libB using libtool, if libB.la
exists, libtool will add all libraries libB.la refers to (dependency_libs
field) to the linker command line and store them in the dependency_libs
field of libA.la. So everything that subsequently links with libA will also
link to these extra libraries. This causes too much overlinking.
This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging. However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.
So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).
(Only the first 15 lines of the commit message are shown above )
Previous commit should have the following log:
Support stage
Fix build with clang
Switch to wxGTK 3.0
Convert to USES=libtools
Add missing run dependencies
and the revision should have been bumped
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.
This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.
Approved by: portmgr (bapt)
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead
PR: 157936
Submitted by: myself
Exp-runs by: pav
Approved by: pav
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.
It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.
With help: marcus and kwm
Pointyhat-exp: a few times by pav
Tested by: pgollucci, "Romain Tartière" <romain@blogreen.org>, and
a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by: marcus
Approved by: portmgr
Bump portrevision due to upgrade of devel/gettext.
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav)
- Set --mandir and --infodir in CONFIGURE_ARGS if the configure script
supports them. This is determined by running ``configure --help'' in
do-configure target and set the shell variable _LATE_CONFIGURE_ARGS
which is then passed to CONFIGURE_ARGS.
- Remove --mandir and --infodir in ports' Makefile where applicable
Few ports use REINPLACE_CMD to achieve the same effect, remove them too.
- Correct some manual pages location from PREFIX/man to MANPREFIX/man
- Define INFO_PATH where necessary
- Document that .info files are installed in a subdirectory relative to
PREFIX/INFO_PATH and slightly change add-plist-info to use INFO_PATH and
subdirectory detection.
PR: ports/111470
Approved by: portmgr
Discussed with: stas (Mk/*), gerald (info related stuffs)
Tested by: pointyhat exp run
- Update to version 0.8.1
- Use MASTER_SITES_ABBREVS in MASTER_SITES
PR: 112136
Submitted by: KATO Tsuguru <tkato432 AT yahoo.com>
Approved by: clsung (mentor, implicitly)
