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Port details
mcsim Monte Carlo stochastic simulations and Bayesian inference
6.2.0_2 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 6.2.0_2Version of this port present on the latest quarterly branch.
Maintainer: ale_sagra@hotmail.com search for ports maintained by this maintainer
Port Added: 2019-10-03 08:52:16
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: GPLv3+
WWW:
https://www.gnu.org/software/mcsim/
Description:
GNU MCSim is a simulation package, written in C, which allows you to: * design and run your own statistical or simulation models * perform Monte Carlo stochastic simulations * do Bayesian inference through Markov Chain Monte Carlo simulations * formally optimize experimental designs
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (93 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/mcsim-6.2.0_2/catalog.mk
  3. /usr/local/share/licenses/mcsim-6.2.0_2/LICENSE
  4. /usr/local/share/licenses/mcsim-6.2.0_2/GPLv3+
  5. bin/makemcsim
  6. bin/makemcsimp
  7. bin/mod
  8. bin/makemcsims
  9. bin/makemcsimd
  10. include/delays.h
  11. include/matutil.h
  12. include/list.h
  13. include/lex.h
  14. include/sim.h
  15. include/lexfn.h
  16. include/hungtype.h
  17. include/modiface.h
  18. include/modelu.h
  19. include/random.h
  20. include/yourcode.h
  21. include/config.h
  22. lib/libmcsim.so.0.0.0
  23. lib/libmcsim.so.0
  24. lib/libmcsim.so
  25. lib/libmcsim.a
  26. share/mcsim/mod/getopt.c
  27. share/mcsim/mod/getopt.h
  28. share/mcsim/mod/hungtype.h
  29. share/mcsim/mod/lex.c
  30. share/mcsim/mod/lex.h
  31. share/mcsim/mod/lexerr.c
  32. share/mcsim/mod/lexerr.h
  33. share/mcsim/mod/lexfn.c
  34. share/mcsim/mod/lexfn.h
  35. share/mcsim/mod/mod.c
  36. share/mcsim/mod/mod.h
  37. share/mcsim/mod/modd.c
  38. share/mcsim/mod/modd.h
  39. share/mcsim/mod/modi.c
  40. share/mcsim/mod/modi.h
  41. share/mcsim/mod/modiSBML.c
  42. share/mcsim/mod/modiSBML2.c
  43. share/mcsim/mod/modiSBML.h
  44. share/mcsim/mod/modo.c
  45. share/mcsim/mod/modo.h
  46. share/mcsim/mod/strutil.c
  47. share/mcsim/mod/strutil.h
  48. share/mcsim/sim/delays.c
  49. share/mcsim/sim/delays.h
  50. share/mcsim/sim/getopt.c
  51. share/mcsim/sim/getopt.h
  52. share/mcsim/sim/hungtype.h
  53. share/mcsim/sim/lex.c
  54. share/mcsim/sim/lex.h
  55. share/mcsim/sim/lexerr.c
  56. share/mcsim/sim/lexerr.h
  57. share/mcsim/sim/lexfn.c
  58. share/mcsim/sim/lexfn.h
  59. share/mcsim/sim/list.c
  60. share/mcsim/sim/list.h
  61. share/mcsim/sim/lsodes.h
  62. share/mcsim/sim/lsodes1.c
  63. share/mcsim/sim/lsodes2.c
  64. share/mcsim/sim/matutil.c
  65. share/mcsim/sim/matutil.h
  66. share/mcsim/sim/matutilo.c
  67. share/mcsim/sim/matutilo.h
  68. share/mcsim/sim/mh.c
  69. share/mcsim/sim/mh.h
  70. share/mcsim/sim/modelu.c
  71. share/mcsim/sim/modelu.h
  72. share/mcsim/sim/modiface.h
  73. share/mcsim/sim/optdsign.c
  74. share/mcsim/sim/optdsign.h
  75. share/mcsim/sim/random.c
  76. share/mcsim/sim/random.h
  77. share/mcsim/sim/sim.c
  78. share/mcsim/sim/sim.h
  79. share/mcsim/sim/simi.c
  80. share/mcsim/sim/simi.h
  81. share/mcsim/sim/siminit.c
  82. share/mcsim/sim/siminit.h
  83. share/mcsim/sim/simmonte.c
  84. share/mcsim/sim/simmonte.h
  85. share/mcsim/sim/simo.c
  86. share/mcsim/sim/simo.h
  87. share/mcsim/sim/strutil.c
  88. share/mcsim/sim/strutil.h
  89. share/mcsim/sim/yourcode.c
  90. share/mcsim/sim/yourcode.h
  91. @owner
  92. @group
  93. @mode
Collapse this list.
Dependency lines:
  • mcsim>0:math/mcsim
To install the port:
cd /usr/ports/math/mcsim/ && make install clean
To add the package, run one of these commands:
  • pkg install math/mcsim
  • pkg install mcsim
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mcsim
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1591263851 SHA256 (mcsim-6.2.0.tar.gz) = c6a3a685dfb9a6f0e99760f2628a91cf40798f6f05d4577e49fade9d80664f7e SIZE (mcsim-6.2.0.tar.gz) = 2221353

Packages (timestamps in pop-ups are UTC):
mcsim
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest6.2.0_26.2.0_26.2.06.2.0_26.2.0_2-6.2.0-
FreeBSD:13:quarterly6.2.0_26.2.0_26.2.0_26.2.0_26.2.0_26.2.0_26.2.0_26.2.0_2
FreeBSD:14:latest6.2.0_26.2.0_26.2.0_26.2.0_26.2.0_26.2.0_2-6.2.0_2
FreeBSD:14:quarterly6.2.0_26.2.0_2-6.2.0_26.2.0_26.2.0_26.2.0_26.2.0_2
FreeBSD:15:latest6.2.0_26.2.0_2n/a6.2.0_2n/a6.2.0_26.2.0_26.2.0_2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. indexinfo>=0.3.0 : print/indexinfo
  2. gsl>=2.5 : math/gsl
Runtime dependencies:
  1. indexinfo : print/indexinfo
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for mcsim-6.2.0_2: GSL=on: GNU Scientific Library support (recommended) SUNDIALS=off: Sundial's Cvodes integrator ===> Use 'make config' to modify these settings
Options name:
math_mcsim
USES:
libtool shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.fu-berlin.de/unix/gnu/mcsim/
  2. ftp://ftp.mirrorservice.org/sites/ftp.gnu.org/gnu/mcsim/
  3. ftp://mirrors.rit.edu/gnu/mcsim/
  4. http://download.xs4all.nl/gnu/mcsim/
  5. http://ftp.halifax.rwth-aachen.de/gnu/mcsim/
  6. http://ftp.kddilabs.jp/GNU/gnu/mcsim/
  7. http://mirror.navercorp.com/gnu/mcsim/
  8. https://ftp.gnu.org/gnu/mcsim/
  9. https://ftpmirror.gnu.org/mcsim/
  10. https://mirror.netcologne.de/gnu/mcsim/
  11. https://mirrors.kernel.org/gnu/mcsim/
  12. https://www.nic.funet.fi/pub/gnu/gnu/mcsim/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
6.2.0_2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
6.2.0_2
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
6.2.0_2
20 Jun 2022 01:30:38
commit hash: def66708ab5ae16a4f751b641fd60d60c63ee5facommit hash: def66708ab5ae16a4f751b641fd60d60c63ee5facommit hash: def66708ab5ae16a4f751b641fd60d60c63ee5facommit hash: def66708ab5ae16a4f751b641fd60d60c63ee5fa files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/sundials: Update 5.7.0 -> 6.2.0
6.2.0_1
27 Aug 2021 22:33:14
commit hash: 80469139f77f357b974af84e65c59f428dc130eacommit hash: 80469139f77f357b974af84e65c59f428dc130eacommit hash: 80469139f77f357b974af84e65c59f428dc130eacommit hash: 80469139f77f357b974af84e65c59f428dc130ea files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/octave: Update 3.1.2 -> 5.7.0
6.2.0
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
6.2.0
06 Jun 2020 19:44:13
Revision:538128Original commit files touched by this commit
cs search for other commits by this committer
Update to 6.2.0

PR:		246970
Submitted by:	maintainer
6.1.0_1
25 Oct 2019 23:41:34
Revision:515671Original commit files touched by this commit
tcberner search for other commits by this committer
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
6.1.0
03 Oct 2019 08:52:08
Revision:513654Original commit files touched by this commit
pi search for other commits by this committer
New port: math/mcsim

GNU MCSim is a simulation package, written in C, which allows you to:

   * design and run your own statistical or simulation models
   * perform Monte Carlo stochastic simulations
   * do Bayesian inference through Markov Chain Monte Carlo simulations
   * formally optimize experimental designs

WWW: https://www.gnu.org/software/mcsim/

PR:		240966
Submitted by:	Alessandro Sagratini <ale_sagra@hotmail.com>

Number of commits found: 9