math/suitesparse: avoid mixing various BLAS/LAPACK libraries

When math/blas and math/atlas are installed on the same machine, it
seems that they can be mixed, causing a CHOLMOD failure.

PR:		279820
Reported by:	gja822@narod.ru

math/suitesparse: upgrade to v7.7.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.7.0>

math/suitesparse: upgrade to v7.6.1 / GraphBLAS to 9.0.3

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.6.1>

math/suitesparse: upgrade to v7.6.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.6.0>

math/suitesparse: upgrade to v7.5.1

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.5.1>

math/suitesparse-paru: new port, parallel unsymmetric multifrontal method

math/suitesparse: upgrade SuiteSparse to v7.5.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.5.0>

math/suitesparse: remove ELFv1 support

math/suitesparse: upgrade to v7.4.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.4.0>.

math/suitesparse[-config]: upgrade to v7.3.1

- This for CHOLMOD 5.0.1;

- also add an option to support BLIS.

math/suitesparse[-config]: upgrade to v7.3.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.3.0>

*/*: chase the removal of math/gotoblas

Thanks to yuri@ the latest consumers have been fixed.

PR:		274110
Reported by:	Ivan Rozhuk

math/suitesparse: upgrade to v7.2.2

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.2.2>

It seems that only CHOLMOD is really updated.

math/suitesparse: upgrade to v7.2.1

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.2.1>

math/suitesparse: upgrade to v7.2.0

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.2.0>

math/suitesparse-config: upgrade to v7.2.0

Release notes at
	<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.2.0>.

math/suitesparse*: upgrade SuiteSparse  to v7.1.0

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.1.0>.

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/suitesparse: upgrade to v7.0.1

math/suitesparse: fix a typo

It produced a warning in poudriere:
Warning: math/suitesparse dependency on math/suitesparse-camd has wrong PKGNAME
of 'suitesparse-btf' but should be 'suitesparse-camd'

PR:		269068
Reported by:	peter.larsen (at) larsendata.dk

math/suitesparse*: upgrade to v7.0.0

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v7.0.0>

math/suitesparse: upgrade to v6.0.3

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v6.0.3>.

math/suitesparse: upgrade to v6.0.2

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v6.0.2>.

Most notable change: Fortran is no more used in suitesparse-config, only
suitesparse-amd depends on it (it could even build without Fortran, but
since Fortran is already brought by OpenBlas, there is no interest to
remove some functionnalities).

math/suitesparse: do not force OpenBLAS

The different implementations of BLAS may be choosen by an option radio
and it was a mistake to force it (a remainder of some test…).

Do not bump PORTREVISION since this is the default.

PR:		268023
Reported by:	alt2600 (at) icloud.com

math/suitesparse: upgrade to v6.0.1

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases>.

PR:		267742

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math/suitesparse: upgrade to v5.13.0

Includes GraphBLAS v7.2.0.

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.13.0>

metaport: remove license

metaports do not contain any licensed files, or materials

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/suitesparse*: upgrade to 5.12.0

Upgrade SuiteSparse (and suitesparse-config) to 5.12.0, SPQR to 2.1.0,
and GraphBLAS to v7.0.3.

math/suitesparse: fix build on armv7

libomp is not available on LLVM on armv7.

math/suitesparse: disable OPENMP on powerpc

LLVM on powerpc doesn't have libomp.

math/suitesparse*: force PORTNAME in lowercase

Force PORTNAME in lowercase, even if upstream uses uppercases.

Requested by:	sunpoet@ and danfe@

math/suitesparse: upgrade to v5.10.1

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.10.1>

math/suitesparse: transform into a meta-port

Advantages of this modularization:

. much parallelization during the build
. no need to rebuild every module for each update
. define each license
. only the needed package may be installed

Also adding an option to disable the optimization.

math/suitesparse: upgrade to 5.10.0

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.10.0>.

Remove # $FreeBSD$ from Makefiles.

Upgrade to v5.9.0.

Release notes at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.9.0>.

Introduce devel/onetbb and mark devel/tbb as legacy

Intel oneAPI tbb 2021.1 (onetbb) has been released[1][2] and has deprecated
several interfaces over tbb 2020, breaking most dependent ports.

Old tbb 2020 will be kept for a certain time to allow transition but will be
removed in a near future as it CONFLICTS with devel/onetbb. New ports should
now use devel/onetbb instead of devel/tbb.

We tried to move a maximum number of dependent ports to devel/onetbb (or
disable dependency when not possible), but some of them still remain stuck
to devel/tbb. Remaining ones have not been identified as major dependencies
themselves and will be fixed as soon as updates are available from upstream.

PR:		252648, 252688 [3], 252683 [4], 252651 [5], 252690 [3], 252693 [3],
	252695 [3], 252696 [3], 252786 [3], 252649, 252868 [6], 252870 [5],
	252684 [7], 252785 [7]
Approved by:	yuri [3], jwb [4], thierry [5], FreeBSD@Shaneware.biz [6],
	maintainer timeout [7]

[1]
https://software.intel.com/content/www/us/en/develop/articles/intel-oneapi-threading-building-blocks-release-notes.html
[2]
https://software.intel.com/content/www/us/en/develop/articles/tbb-revamp.html

aarch64 support OpenMP since FreeBSD 12.2

Upgrade to v5.8.1.

Changelog at
<https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1>.

math/suitesparse: unbreak on aarch64

We don't have openmp yet

PR:		248100
Approved by:	portmgr (tier-2 blanket)

Update devel/tbb to 2020.3 and bump dependent ports' revisions

Changelog: https://github.com/oneapi-src/oneTBB/blob/v2020.3/CHANGES

Fix linkage on 11.3 i386.

Reported by:	antoine

Remove extra CFLAGS.

See also <https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/51>.

PR:		247763
Submitted by:	rsmith (at) xs4all.nl

Fix an implicit conversion from long to double.

PR:		247763
Submitted by:	rsmith (at) xs4all.nl

- Upgrade to v5.8.0: release notes at
  <https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0	>

- Optionnally build the demos (but do not install them)

- Remove compiler:openmp which pulls an unneeded Gcc.

Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 3).

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

math/suitesparse: fix build on powerpc64 elfv1

After last update, compiler:openmpi comes before compiler:c++11-lang. This
effectively overrides compiler:c++11-lang and causes base GCC to be used.
compiler:openmpi could probably be dropped, now that all supported FreeBSD
versions have compiler that supports OpenMP (either GCC or Clang), but this
would mean that Clang architectures would switch from GCC to Clang for this
port, so it would have to be separately tested by the maintainer.

Fix on i386, by using Gcc.

Unfortunately, SuiteSparse is now hit by the problem listed in PR 230888
(missing support of libatomic).

Reported by:	pkgfallout via antoine@

- Same site web, but mow the sources are on GihtHub;

- Upgrade to v5.7.2
  Many release notes at
  <https://github.com/DrTimothyAldenDavis/SuiteSparse/releases>

- Add some missing modules to pkg-descr.

Update devel/tbb to 2020.2 and bump dependent port's revisions

Changelog: https://github.com/oneapi-src/oneTBB/blob/tbb_2020/CHANGES

Document OpenMP from base system cannot be used in some cases

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]

Also, while here, re-generate patches using the makepatch target

[1] Changelog: https://github.com/intel/tbb/blob/v2020.0/CHANGES

math/suitesparse: simplify

- Allow using Clang again (base libomp.so or OpenMP disabled)
- Respect C++ library if using GCC (must be libc++ on Clang architectures)
- Respect CFLAGS/CXXFLAGS in subdirectories using CMake
- Respect BLAS/LAPACK choice (actually use OpenBLAS)
- Enable Intel threading building blocks support
- Switch to vendor build/install targets
- Adjust plist for new items (GraphBLAS, Mongoose, DOCS)
- Skip running demos during build

PR:		240899
Tested by:	pkubaj
Approved by:	fortran (thierry)
MFH:		2019Q4

math/suitesparse: force rebuild after r512983

RUN_DEPENDS switched from devel/openmp to lang/gcc9.

Revert to r512240.

Reported by:	jbeich

Explicitely depend on OMP.

Re-enable parallel build.

Submitted by:	jkim

Fix on -CURRENT.

PR:		240672
Reported by:	ohartmann (at) walstatt.org

- Use SSL master_sites (1)

- Upgrade to 5.4.0 (Latest stable release) (2)

- Since I'm here make the pre-configure operations visible.

PR:		239080 (1)
Submitted by:	imagin8r (T) protonmail.com

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

math/suitesparse: Fix undesirable linking with pre-installed older version

PR:		227791
Reported by:	John Hein <z7dr6ut7gs@snkmail.com>

math/suitesparse: Unbreak with the option ATLAS=yes

It was an incomplete makefile patching beginning from 5.2.0 update.

PR:		210579 227791
Approved by:	portmgr (port compliance, infrastructure)

math/suitesparse: Remove PLIST_SUB for the shared lib version

Reported by:	mat

math/suitesparse: Update 4.0.2 -> 5.2.0

Port changes:
* Change to DISTVERSION
* Update MASTER_SITES
* Change to LICENSE_COMB=dual
* Add LIB_DEPENDS
* Unbundle metis, made it a dependency
* Update do-build and do-install
* Update WWW

Bump 11 ports.
games/naev is marked broken because it depends on the no longer installed
library.

PR:		210579
Submitted by:	yuri
Submitted by:	pfg
Approved by:	maintainer timeout (maho@FreeBSD.org, 21 months)
Approved by:	maintainer timeout (fortran@FreeBSD.org, 45 days)

Return maho@'s ports to the pool after his commit bit expired.

With hat:	portmgr

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

- Fix trailing whitespace in pkg-descrs, categories [g-n]*

Approved by:	portmgr blanket

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Backout previous commit; actually it was not a typo.

Fix for the default.

Use bsd.options.desc.mk for descriptions

Suggested by: demon@

Fix typo for OpenBLAS option (1), and remove gotoblas option.

Submitted by:	demon (1)

math category: Remove $PTHREAD_LIBS

Note that math/PDL did not pass stage-QA before, so it was fixed.

approved by:	PTHREAD blanket

Uses the new blaslapack.mk.

Reviewed by:	maho (maintainer)

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

Repair instances, almost all courtesy of bf ;-), of spaces
and/or tabs before the =. This made doing regular expressions
on the ports tree really difficult.

Approved by:	portmgr (not really, but touches unstaged ports)

Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr

- Stagify

Approved by:	portmgr blanket

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

Convert USE_GMAKE to USES=gmake and move the definition prior to .pre.mk to fix
the build

- Remove empyt dirs

Install some relevant header files.

Submitted by: olgeni@

* update to 4.0.2
* correct openblas dependency [1]

Submitted by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> [1]

add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate
CONFLICTS, LATEST_LINK, and PORTSCOUT; adjust dependent ports; explicitly
note the restrictive license of the metis ports (while here, append the MPI port
to
*DEPENDS in math/parmetis, rather than using an assignment)

PR:             169578

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes