| Port details |
- afni Advanced Functional Neuro Imaging
- 25.1.03 science
 =3      25.0.13Version of this port present on the latest quarterly branch. - Maintainer: fernape@FreeBSD.org
- Port Added: 2006-01-25 17:37:44
- Last Update: 2025-04-15 06:21:43
- Commit Hash: c9b2d2b
- People watching this port, also watch:: hp48xgcc, hte, disco, zsnes, stunnel
- Also Listed In: biology graphics perl5 python
- License: GPLv2
- WWW:
- https://afni.nimh.nih.gov/afni/
- Description:
- AFNI (Analysis of Functional Neuro Imaging) is a tool for analyzing
3-dimensional images, especially functional MRI images used in brain mapping
research.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- Conflicts:
- CONFLICTS:
- im
- nifticlib
- open-usp-tukubai
- To install the port:
- cd /usr/ports/science/afni/ && make install clean
- To add the package, run one of these commands:
- pkg install science/afni
- pkg install afni
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: afni
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1744612319
SHA256 (afni-afni-AFNI_25.1.03_GH0.tar.gz) = 7b2ad73c7ab98f9384dea0d9dcc9cf1bf86e22d96683e7877f72aa1eaeed3494
SIZE (afni-afni-AFNI_25.1.03_GH0.tar.gz) = 53273287
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gm4 : devel/m4
- R : math/R
- R-cran-lme4>0 : math/R-cran-lme4
- R-cran-snow>0 : science/R-cran-snow
- R-cran-psych>0 : math/R-cran-psych
- gettext-runtime>=0.22_1 : devel/gettext-runtime
- msgfmt : devel/gettext-tools
- gmake>=4.4.1 : devel/gmake
- python3.11 : lang/python311
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xi.pc : x11/libXi
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- perl5>=5.36<5.37 : lang/perl5.36
- Test dependencies:
-
- python3.11 : lang/python311
- Runtime dependencies:
-
- endian : sysutils/endian
- ffmpeg : multimedia/ffmpeg
- qhull : math/qhull
- R : math/R
- R-cran-lme4>0 : math/R-cran-lme4
- R-cran-snow>0 : science/R-cran-snow
- R-cran-psych>0 : math/R-cran-psych
- cjpeg : graphics/jpeg-turbo
- python3.11 : lang/python311
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xi.pc : x11/libXi
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- perl5>=5.36<5.37 : lang/perl5.36
- Library dependencies:
-
- libexpat.so : textproc/expat2
- libXm.so : x11-toolkits/open-motif
- libf2c.so : lang/f2c
- libfontconfig.so : x11-fonts/fontconfig
- libfreetype.so : print/freetype2
- libgsl.so : math/gsl
- libicudata.so : devel/icu
- libnetcdff.so : science/netcdf-fortran
- libnetpbm.so : graphics/netpbm
- libpcre2-8.so : devel/pcre2
- libpng16.so : graphics/png
- libintl.so : devel/gettext-runtime
- libGL.so : graphics/libglvnd
- libGLU.so : graphics/libGLU
- libglib-2.0.so : devel/glib20
- libintl.so : devel/gettext-runtime
- libxml2.so : textproc/libxml2
- libXm.so.4 : x11-toolkits/open-motif
- libreadline.so.8 : devel/readline
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for afni-25.1.03:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- science_afni
- USES:
- gettext gl gmake gnome iconv jpeg:run motif readline perl5 python shebangfix tar:xz xorg
- pkg-message:
- For install:
- For quick info, run "man afni".
For AFNI configuration and usage, please visit the AFNI WEB site at
http://afni.nimh.nih.gov.
---
SUMA requires the nVidia graphics driver (x11/nvidia-driver*)
or DRI (graphics/dri).
---
FreeBSD ports for other AFNI versions are available at
https://github.com/outpaddling/freebsd-ports-wip
---
For large 3dDeconvolve analyses, you may need to increase one or
more of the following shared memory limits using sysctl (and
/etc/sysctl.conf to make the changes permanent):
kern.ipc.shmall
kern.ipc.shmmax
kern.ipc.shmmin
kern.ipc.shmmni
kern.ipc.shmseg
---
AFNI_PLUGIN_PATH should be set to /usr/local/lib/afni:/usr/local/share/afni
AFNI_GLOBAL_SESSION should be set to /usr/local/share/afni.
You can do this by sourcing /usr/local/etc/mri/afni.profiles for
Bourne-style shells or or /usr/local/etc/mri/afni.cshrc for C-style shells.
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2012.04.17.2129_1
01 Jun 2012 05:26:28
  |
dinoex |
- update png to 1.5.10 |
2012.04.17.2129
11 May 2012 17:05:09
|
pawel |
- Update to build 2012-04-17 [1]
- Projest has new homepage [1]
- Mark MAKE_JOBS_UNSAFE
PR: ports/167651 [1]
Submitted by: Jason Bacon <jwbacon@tds.net> (maintainer) [1] |
2008.01.02.1043_6
24 Oct 2011 09:11:38
|
dougb |
The vast majority of pkg-descr files had the following format when they
had both lines:
Author: ...
WWW: ....
So standardize on that, and move them to the end of the file when necessary.
Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.
s/AUTHOR/Author/
A few other various formatting issues |
2008.01.02.1043_6
03 Jul 2011 13:22:25
|
ohauer |
- remove MD5 |
2008.01.02.1043_6
02 May 2011 12:44:53
|
makc |
Bump PORTREVISION after open-mofit update |
2008.01.02.1043_5
31 May 2010 02:01:56
|
ade |
Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. |
2008.01.02.1043_4
28 Mar 2010 06:47:48
|
dinoex |
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi |
2008.01.02.1043_3
05 Feb 2010 11:46:55
|
dinoex |
- update to jpeg-8 |
2008.01.02.1043_2
19 Jun 2009 20:06:31
|
linimon |
Update maintainer's email address. Had already been done for his
other ports. |
2008.01.02.1043_2
24 Jan 2009 10:02:09
|
flz |
Fix science/afni after X.org 7.4 import (needs Xi).
Reported by: pointyhat (via pav) |
2008.01.02.1043_1
25 Jul 2008 12:24:09
|
pav |
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV |
2008.01.02.1043_1
06 Jun 2008 13:59:05
|
edwin |
Bump portrevision due to upgrade of devel/gettext.
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav) |
2008.01.02.1043
19 Apr 2008 17:56:05
 |
miwi |
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+
Thanks to all Helpers:
Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
ehaupt, nox, itetcu, flz, pav
PR: 116263
Tested on: pointyhat
Approved by: portmgr (pav) |
2008.01.02.1043
28 Jan 2008 16:42:02
|
tabthorpe |
- Update to 2008.01.02.1043
PR: ports/119961
Submitted by: Jason Bacon <bacon smithers.neuro.mcw.edu> (maintainer) |
2007.06.15.1339
21 Jun 2007 12:33:48
|
miwi |
- Update to 2007.06.15.1339
- Unbreak
PR: 113887
Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer) |
2007.04.18.1830_1
10 Jun 2007 04:04:38
|
kris |
BROKEN: Does not compile |
2007.04.18.1830_1
19 May 2007 20:32:57
|
flz |
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}. |
2007.04.18.1830
21 Apr 2007 13:37:39
|
miwi |
- Update to 2007.04.18.1830
- Respect X11BASE
PR: 111890
Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer) |
2006.06.30.1332
01 Dec 2006 14:07:50
|
laszlof |
Respect X11BASE
PR: ports/106101
Submitted by: self
Approved by: Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)
Reported by: pointyhat |
2006.06.30.1332
24 Sep 2006 18:24:09
|
pav |
- Fix plugins
- Update to 2006.06.30.1332
PR: ports/103318
Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer) |
2006.03.21.1314
06 Jul 2006 21:57:06
|
linimon |
Remove backquote from BROKEN string to avoid upsetting portsmon code.
Hat: portmgr |
2006.03.21.1314
25 May 2006 14:23:50
|
arved |
Update to 2006.03.21.1314
PR: 97404
Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> |
2005.12.30.0934.2
15 Apr 2006 18:24:01
|
arved |
Update to 2005.12.30.0934.2
PR: 94302
Submitted by: maintainer |
2005.12.30.0934
13 Feb 2006 10:24:18
|
vd |
Change `NOT_FOR_ARCHS' with `if ARCH then BROKEN'
Noticed by: danfe
Approved by: garga (mentor) |
2005.12.30.0934
09 Feb 2006 15:58:54
|
vd |
Mark NOT_FOR_ARCHS=sparc64, maintainer did not fix the build for 7 days
after kris' mail
Approved by: garga (mentor) |
2005.12.30.0934
30 Jan 2006 10:03:13
|
vd |
Changes to the port:
Author fixed the problem with filename versioning by placing filenames
without version in their name in a subdirectory on the web server.
Changes to the software itself:
-DPIC -fPIC used only for amd64 and ia64, suggested by kris
Approved by: garga (mentor) |
2005.12.30.0934
26 Jan 2006 09:35:45
|
vd |
Update Makefile.FreeBSD_PORT's checksum.
-DPIC -fPIC were added to CFLAGS in Makefile.FreeBSD_PORT to make it
compile on amd64.
Approved by: garga (mentor) |
2005.12.30.0934
25 Jan 2006 17:34:35
|
vd |
Add new port science/afni
AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing
3 dimensional images, especially functional MRI images used in
brain mapping research.
WWW: http://afni.nimh.nih.gov/
PR: ports/90752
Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reviewed by: garga (mentor)
Approved by: garga (mentor) |
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