science/agrum: Update WWW

science/agrum: update 1.17.1 → 1.17.2

science/agrum: update 1.17.0 → 1.17.1

science/agrum: update 1.15.1 → 1.17.0

science/agrum: update 1.15.0 → 1.15.1

science/agrum: update 1.14.1 → 1.15.0

science/agrum: update 1.14.0 → 1.14.1

science/agrum: Add swig as test dependency

science/agrum: update 1.13.1 → 1.14.0

security/libsodium: update to 1.0.19, bump dependent ports

PR:	278259
Reported by:	Andrey Korobkov <alster-vinterdalen.se>

science/agrum: update 1.12.1 → 1.13.1

science/agrum: update 1.10.0 → 1.12.1

*/*: Sunset 12.4-RELEASE/12-STABLE from ports tree

- Remove all references to defunct ARCH arm
- Remove all references to defunct ARCH sparc64
- Remove x11-drivers/xf86-video-sunffb which requires defunct sparc64
  ARCH
- Remove sysutils/afbinit requires defunct sparc64 ARCH
- Remove all references to bktr driver
- Remove all references to defunct FreeBSD_12
- Remove all references to OSVERSION/OSREL corresponding to 12
- Remove conditionals in Mk/Uses/cabal.mk
- Remove sparc reference from Mk/Uses/qt-dist.mk
- Remove BROKEN_sparc64/NOT_FOR_ARCH=sparc64
- Remove BROKEN_FreeBSD_12* from:
- Remove OpenSSL patches from:
- Remove conditional flags for OSVERSION >= 1300000 to fixed flags.
  Also move conditional flags for non sparc64/arm ARCH to fixed flags.

Reviewed by:	brooks, jbeich, rene, salvadore
Differential Revision: https://reviews.freebsd.org/D42068

science/agrum: update 1.9.0 → 1.10.0

science/agrum: Update 1.8.3 → 1.9.0

bsd.sites.mk: Update all ports using USE_GITLAB

Replace GL_COMMIT by GL_TAGNAME in all ports. The new GL_TAGNAME is
backwards-compatible (accepting any commit hash as before), but also
understands an actual tag name. Moving to tag names where appropriate is
left to individual ports' maintainers.

Approved by:		portmgr (tcberner, mentor)
Differential Revision:	https://reviews.freebsd.org/D37077

science/agrum: Update 1.5.2 → 1.8.3

all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

science/agrum: Broken on 12

Reported by:	fallout

science/agrum: Update 1.3.1 -> 1.5.2

science/agrum: Update 1.2.0 -> 1.3.1

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/agrum: Update 1.1.1 -> 1.2.0

Also add test target.

science/agrum: Update 1.1.0 -> 1.1.1

science/agrum: Update 1.0.0 -> 1.1.0

science/agrum: Update 0.22.1 -> 1.0.0

science/agrum: Update 0.22.0 -> 0.22.1

science/agrum: Update 0.21.0 -> 0.22.0

Reported by:	portscout

science/agrum: Update 0.20.3 -> 0.21.0

science/agrum: Update 0.20.2 -> 0.20.3

science/agrum: Update 0.20.1 -> 0.20.2

science/agrum: Update 0.19.3 -> 0.20.1

Regenerate all distfiles using gitlab as source.

This regeneration is required as the new gitlab version changed
the address and the directory the source files can be downloaded.

This commit also applies some small fixes to make sure all ports using
gitlab are buildable.

Reviewed by:	mat
Approved by:	portmgr
Differential Revision:	https://reviews.freebsd.org/D29628

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

science/agrum: Update 0.19.2 -> 0.19.3

science/agrum: Update 0.19.1 -> 0.19.2

Reported by:	portscout

science/agrum: Update 0.19.0 -> 0.19.1

Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103

science/agrum: Add Python dependencies

science/agrum: Update 0.18.2 -> 0.19.0

science/agrum: Update 0.18.1 -> 0.18.2

Changelog: https://gitlab.com/agrumery/aGrUM/-/blob/master/CHANGELOG.md

MFH:		2020Q4 (bugfix release)

science/agrum: Update 0.18.0 -> 0.18.1

science/agrum: Update 0.17.3 -> 0.18.0

science/agrum: Update 0.17.2 -> 0.17.3

Reported by:	portscout

science/agrum: fix build on GCC architectures

C++14 compiler is required:
  ** aGrUM error: aGrUM is now using C++14.  Please find a compiler (for
  instance GCC) C++14 compliant

MFH:		2020Q2 (fix build blanket)

science/agrum: Update 0.17.1 -> 0.17.2

Reported by:	portscout

science/agrum: Update 0.16.4 -> 0.17.1

Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020

science/agrum: fix build on powerpc64 elfv2

LLD can't link this port on powerpc64 elfv2:
ld: error: relocation refers to a discarded section: .text._ZN3gum9ExceptionD2Ev
>>> defined in
src/CMakeFiles/agrum.dir/agrum/core/approximations/approximationScheme.cpp.o
>>> section group signature: _ZN3gum9ExceptionD2Ev
>>> prevailing definition is in
src/CMakeFiles/agrum.dir/agrum/core/approximations/IApproximationSchemeConfiguration.cpp.o
>>> referenced by approximationScheme.cpp
>>>              
src/CMakeFiles/agrum.dir/agrum/core/approximations/approximationScheme.cpp.o:(gum::OutOfLowerBound::OutOfLowerBound(std::__1::basic_string<char,
std::__1::char_traits<char>, std::__1::allocator<char> >,
std::__1::basic_string<char, std::__1::char_traits<char>,
std::__1::allocator<char> >))

PR:		242804
Approved by:	yuri (maintainer)

science/agrum: Update 0.16.3 -> 0.16.4

Reported by:	repology

science/agrum: Update 0.15.2 -> 0.16.3

Reported by:	portscout

Switch default devel/llvm* to 90

PR:		239682
Reviewed by:	tobik
Differential Revision:	https://reviews.freebsd.org/D21172

science/agrum: Update 0.15.0 -> 0.15.2

Those ports link against llvm's libomp.so

science/agrum: Update 0.14.3 -> 0.15.0

Reported by:	portscout

Bump a few PORTREVISIONs after r498529

With hat:	portmgr

Remove bogus dependency, agrum links against libomp from llvm

science/agrum: Correct the previous update: it didn't have the GL_COMMIT hash
updated

science/agrum: 0.14.1 -> 0.14.3

Switch to devel/llvm80 for DEFAULT_VERSIONS

PR:		235215

Remove bogus dependency, agrum links against libomp from llvm port

science/agrum: Fix warning messages of 'make describe'

PR:		235729
Submitted by:	Yasuhiro KIMURA <yasu@utahime.org>

science/agrum: Update 0.13.6 -> 0.14.1

Reported by:	repology

science/agrum: Update 0.13.4 -> 0.13.6

Reported by:	repology

science/agrum: Simplify PLIST_SUB

Reported by:	mat

science/agrum: Simplify PLIST_SUB

science/agrum: Fix build for python 3.x

PR:		234780
Reported by:	antoine

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

science/agrum: Add forgottrn patch

science/agrum: Add OPENMP option

science/agrum: Add Python binding; Add ODBC option

The Python binding is bundled for now because that's how
the project is set up.

New port: science/agrum: Graphical modeler for Bayesian networks, influence
diagrams, etc