Avogadro is an advanced molecular editor designed for cross-platform use in
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.
WWW: http://avogadro.cc/
===> The following configuration options are available for avogadro-1.2.0_2:
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
Qt4 deprecation: Remove Qt4 and its consumes.
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
Mark QT4 ports/functionality for removal on 2019-03-15
While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.
Submitted by: tcberner
Reviewed by: adridg, jhale, rene, tcberner
Approved by: portmgr (implicit, flavor hook)
Differential Revision: https://reviews.freebsd.org/D17741
Change x11/xorgproto to become a build dep
Change x11/xorgproto to become a build time dependency when added to
USE_XORG. Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.
PR: 230909
Reviewed by: eadler
Approved by: portmgr (antoine)
Obtained
from: https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run: antoine
Differential Revision: https://reviews.freebsd.org/D16906
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk
From now on, ports that depend on Qt4 will have to set
USES= qt:4
USE_QT= foo bar
ports depending on Qt5 will use
USES= qt:5
USE_QT= foo bar
PR: 229225
Exp-run by: antoine
Reviewed by: mat
Approved by: portmgr (antoine)
Differential Revision: -https://reviews.freebsd.org/D15540
devel/boost-python-libs got forgotten in the python flavorization, fix
this oversight.
Reviewed by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D14368
New USES=eigen
Usage:
USES=eigen:<version>[,<type>]
version: 2 or 3 (required)
type: build (default), run
For example:
USES=eigen:2,build,run
will add a BUILD- and RUN_DEPENDS on math/eigen2, and
USES=eigen:3
will add a BUILD_DEPENDS on math/eigen3.
* Convert the existing ports to use it
- biology/iqtree: remove run time dependency (seemed not to be needed)
- graphics/movit: remove run time dependency (seemed not to be needed)
- science/avogadro: add run time dependeny (installed cmake file requires it
to be present)
Reviewed by: rakuco, mat
Differential Revision: https://reviews.freebsd.org/D13702
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above )
Revision bump of all ports with USE_GL after consolidation of mesa-libs
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D10845
qt4-moc: Add more Boost include guards to moc's definition list.
In preparation for updating Boost to 1.60, add include guards from more Boost
headers to the list of macros that moc automatically defines when processing
files. As explained in r408911, Qt4's moc cannot parse some constructs used by
a few Boost headers, so we define their include guards to make moc skip them.
This is a cleaner approach that allows us to largely revert r408472, r408473,
r408474, r408475, r408502, r408773 and r408419, which added several patches to
many ports to work around this moc bug.
PR: 199601
PR: 208322
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs)
Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
- #14669: Fixed extraction of CC from gmp.h.
- Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
- Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
- 100% of all lines are covered by tests
- Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above )
Fix the build on 64-bits systems.
Add "-fPIC" to the compilation lines if `uname -p' returns "amd64"
(FreeBSD's case).
The patch has been submitted upstream.
PR: ports/178537
science/openbabel:
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel
science/py-openbabel:
- Merge py-openbabel to openbabel
other:
- chase openbabel update
- Detect eigen2 by checking for .pc file, not min. port version.
If a user had eigen3 installed, but not eigen2, the min. port version
check would not differentiate between the two.
Submitted by: Jason E. Hale <bsdkaffee at gmail.com> via area51
Replace USE_GCC=4.3+ by USE_GCC=4.4+ (which, practically, is no change
since Mk/bsd.gcc.mk has been rewriting the former to the later for a bit.)
Approved by: tkjacobsen@gmail.com (maintainer)
Feature safe: yes
The KDE FreeBSD team is proud to announce the release of SIP-4.10 and
PyQt-4.7 for FreeBSD. The official update notes can be found at
http://www.riverbankcomputing.com
We'd like to say thanks to all helpers, testers and submitters.
- Update boost to 1.39
- Split boost port to separate components, with boost-all metaport
PR: ports/137054
Submitted by: Alexander Churanov <churanov.port.maintainer@gmail.com>
(maintainer)
Avogadro is an advanced molecular editor designed for cross-platform use in
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.
WWW: http://avogadro.openmolecules.net/
PR: 134710
Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
