*/*: bump PORTREVISION after the upgrade to OpenBLAS

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

science/erkale: Fix build with clang16 by adding USE_CXXSTD.

Reported by:	fallout

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

science/*: bump PORTREVISION in consumers of libXC

science/erkale: chase libXC 6.0.0

Patch from
<https://github.com/susilehtola/erkale/commit/d507f5c0aa10614f00b1fa77ddb944490a5a7706>.

PR:		267358
Approved by:	yuri (maintainer)

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

*/*: bump all consumers after recent boost upgrade

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

math/armadillo: Update to 10.6.2

Drop maintainership.

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6

science/erkale: Update g20200426 -> g20210215

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

math/armadillo: Update to 10.1.1

- Update math/armadillo to 9.900.2

- Update math/armadillo to 9.870.2

science/erkale: Change the default flavor to 'parallel'; Remove the redundant
OPENBLAS_LIB_DEPENDS line

parallel is what should be a default for production use.

Approved by:	portmgr (flavors were approved by portmgr when the port was
committed)

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.

science/erkale: Update g20200416 -> g20200426

science/erkale: Update g20200319 -> g20200416

science/erkale: fix build on GCC architectures

Use newer GCC:
/usr/local/include/armadillo_bits/compiler_setup.hpp:190:6: error: #error "***
newer compiler required ***"

science/erkale: Update g20200110 -> g20200319

Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

math/openblas: Update to 0.3.7

While here, improve formatting and fix build of dependant ports.

PR:		231371
Submitted by:	yuri (initial version), pkubaj (ppc fixes)
Approved by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> (maintainer)

science/erkale: Update g20191120 -> g20200110

science/erkale: Update g20190812 -> g20191120

Unmark broken on aarch64.

Submitted by:	emaste (TRYBROKEN run)
Approved by:	portmgr (tier-2 blanket)

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

Fix LIB_DEPENDS

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

Switch default devel/llvm* to 90

PR:		239682
Reviewed by:	tobik
Differential Revision:	https://reviews.freebsd.org/D21172

science/erkale: Fix RUN_DEPENDS

Reported by:	fallout

science/erkale: correction

science/erkale: Update g20190412 -> g20190812

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

- Update math/armadillo to 9.600.4

Reported by:	Nina Santi

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

science/erkale: Update g20190318 -> g20190412

Mark as broken on aarch64: fails to configure:

  clang-8: error: no such file or directory: 'NOTFOUND'

Approved by:	portmgr (tier-2 blanket)

science/erkale: Update g20190118 -> g20190318

Bug fixes and documentation update.

Switch to devel/llvm80 for DEFAULT_VERSIONS

PR:		235215

Remove bogus dependency, erkale links against libomp from llvm

science/erkale: Update 0c285c1 -> 4bd3930

science/erkale: Update 0927d8c -> 0c285c1

Port changes:
* Add the standard location for erkale's pseudopotentials.
* Add pkg-message suggesting to install erkale-pseudopotentials

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

science/erkale: BROKEN on i386

Reported by:	fallout

science/erkale: Please approve flavorization: serial and parallel

Allow to concurrently build and install both serial and parallel versions.

Approved by:	portmgr
Differential Revision:	D18315

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

- Update math/armadillo to 9.200.4

New port: science/erkale: Quantum chemistry program to solve the electronic
structure of atoms