science/h5utils: Drop USES=autoreconf

Port builds fine with provided configure

While here, pet Q/A check

*/*: Remove GNU_CONFIGURE_MANPREFIX after move man pages to share/man

Approved by:	portmgr (blanket)

*: Autotools manpages fix

Approved by:	portmgr (blanket)

*/*: Bump jpeg-turbo users treewide

New major version 3.0.0

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

science/h5utils: Adopt/Update to 1.13.2

- Switch to MASTER_SITES
- Add missing lib dependencies (graphics/jpeg-turbo and science/hdf) to
  build bin/h4fromh5 and bin/h5fromh4 binaries
- Use USES+= localbase
- Update new home url

ChangeLog: https://github.com/NanoComp/h5utils/releases/tag/1.13.2

science/*: Fix USES=octave for some ports

In my previous commits of USES=octave conversion I missed two ports in
science category. Fix those to use USES=octave:env.

Approved by:	portmgr (blanket infrastructure)

*/*: Reset Maintainership

As per maintainer's request.

Reported in mail list[1]

[1] https://www.mail-archive.com/ports@freebsd.org/msg02842.html

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

Remove # $FreeBSD$ from Makefiles.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

science/h5utils: Update to 1.13.1

Port changes:
* Change to DISTVERSION
* Add USES=compiler:c++11-lang and CXXFLAGS+=-std=c++11
* Remove duplicate GNU_CONFIGURE and unnecessary +=
* Add the option OCTAVE for Octave integration

PR:		226815
Submitted by:	Klaus Aehlig <aehlig@linta.de> (maintainer) - sumbitted w/out the
OCTAVE option

Remove superfluous linefeeds and fix some other minor whitespace bugs.

- Update to 1.13
- Update WWW

PR:		220994
Submitted by:	aehlig@linta.de(maintainer)

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

- Fix trailing whitespace in pkg-descrs, categories [p-x]*

Approved by:	portmgr blanket

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

3 ports categories: Remove $PTHREAD_LIBS

Categories: print, science, emulators

approved by:	PTHREAD blanket

- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Bump portrevision after png update

Properly support png 1.5

Obtained from:	pkgsrc

Cleanup plist

Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. A few Makefiles
where not included as they contain Latin-1 characters that break
the Phabricator workflow. Categories P-S.

CR:		D422
Approved by:	portmgr (bapt)

- Support staging

PR:		ports/189617
Submitted by:	Klaus Aehlig <aehlig@linta.de> (maintainer)

- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

- update png to 1.5.10

h5utils is a set of utilities for visualization and conversion of
scientific data in the free, portable HDF5 format.

Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).

WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils

PR:             ports/155482
Submitted by:   Klaus Aehlig <aehlig at linta.de>