*/*: Remove incorrect libtool dependency

All these ports builds without libtool

Tested using Poudriere

Approved by:	portmgr (blanket, build fix)

science/hdf5-18: upgrade to 1.8.23

This fixes the build with recent clang.

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

science/hdf5-18: Add CPE information

Approved by:	portmgr (blanket)

Remove # $FreeBSD$ from Makefiles.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Upgrade science/hdf5-18 to 1.8.21.

Release notes at:
<https://portal.hdfgroup.org/display/HDF5/Software+Changes+from+Release+to+Release+for+HDF5-1.8#SoftwareChangesfromReleasetoReleaseforHDF5-1.8-Release1.8.21ofMay2018versusRelease1.8.20>

PR:		233071
Submitted by:	wenheping2000 (at) hotmail.com (Original maintainer)

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Fix plist whith FORTRAN option.

PR:		227857
Submitted by:	jwb

These two ports build and package without issues now on 10.4-STABLE
running under QEMU 2.9.0.

Forgot to bump revision of FORTRAN libs in the previous commit.

Upgrade HDF5 to 1.8.20.

Release notes at
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20-RELEASE.txt

Fix libhdf5-18.settings and suffix usage in tools.

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Upgrade science/hdf5-18 to 1.8.19.

Changelog at
<https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1819>.

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Upgrade to 1.8.18.

Changelog at https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1818

Resurrect hdf5-18, because it is required by french/med and french/aster.

Two releases of HDF5 are available for download. HDF5-1.10 should read files
created with earlier releases, but problem arise with MED and this version.

- Remove science/hdf5-18

When linking a library libA with a library libB using libtool, if libB.la
exists, libtool will add all libraries libB.la refers to (dependency_libs
field) to the linker command line and store them in the dependency_libs
field of libA.la.  So everything that subsequently links with libA will also
link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

- USE_BZIP2 -> USES=tar:bzip2
- Use new LIB_DEPENDS syntax

Approved by:	portmgr (blanket)

Add USES=libtool to fix a linker problem when the FORTRAN option is enabled
on versions of FreeBSD where the base system binutils is too old to link
object files generated by lang/gcc (gfortran).

PR:		ports/187252

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

- Fix PKGNAME collision

- Use CONFLICTS_INSTALL instead of CONFLICTS
- Remove NO_LATEST_LINK

- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

- Update to 1.8.10 patch 1
- Update MASTER_SITES
- Cosmetic change
- Take maintainership
- Reformat pkg-descr

Changes:	http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.10-patch1/src/hdf5-1.8.10-patch1-RELEASE.txt
PR:		ports/176809
Submitted by:	sunpoet (myself)
Approved by:	maintainer (timeout, 24 weeks)

Convert science to new options framework

- Update to 1.8.9
- Update MASTER_SITES
- Pet portlint: remove ABI version number from LIB_DEPENDS
- Restore missing newline at the end of patch file

Changes:       
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.9-RELEASE.txt
                http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/168142
Submitted by:   sunpoet (myself)
Approved by:    maintainer (timeout, 18 days)

Update to 1.8.8

Changes:

Fix bad shell scripts; all regression tests pass now

PR:             ports/163595
Submitted by:   Rob Farmer <rfarmer@predatorlabs.net>
Approved by:    maintainer timeout (49 days)

- Remove WITH_FBSD10_FIX, is no longer needed

- Fix build with FreeBSD 10

- Update to 1.8.7

Changes:        http://hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/158394
Submitted by:   sunpoet (myself)
Approved by:    maintainer (timeout, 16 days)

- Update to 1.8.6

Changes:        http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/155458
Submitted by:   Rob Farmer <rfarmer AT predatorlabs.net>
Approved by:    Quincey Koziol <koziol AT hdfgroup.org> (maintainer)

- Update to 1.8.5 patch 1
- Add option: DEBUG

Changes:        http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:             ports/153400 (based on)
Submitted by:   Rob Farmer <rfarmer@predatorlabs.net>
Approved by:    maintainer (timeout, 17 days)

- Fixed WWW: link

Submitted by:   sunpoet@sunpoet.net (via email)

- Added missing pkg-plist entry

Reported by:    QAT

- Update to 1.8.4

PR:             ports/144782
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by:    koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

- Update to 1.8.3.

PR:             ports/138052
Submitted by:   Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:    Quincey Koziol <koziol@hdfgroup.org> (maintainer)

- Fix fetch

- Resolve LATEST_LINK conflict

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

- Update to 1.8.2

PR:             128988
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer

- Force commit
        repocopy from science/hdf5 to science/hdf5-18