| Port details |
- jmol Java 3D viewer for chemical structures
- 16.1.25_1 science
 =3      16.1.25Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2008-05-17 23:04:58
- Last Update: 2024-12-31 14:39:30
- Commit Hash: ac7a7d6
- People watching this port, also watch:: py39-beautifulsoup, linux_dvbwrapper-kmod, monit, p5-MIME-Tools, gammu
- Also Listed In: java
- License: LGPL21
- WWW:
- http://jsmol.sourceforge.net/
- Description:
- Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four
independent modes: an HTML5-only web application utilizing jQuery, a Java
applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side
component (JmolData.jar). Jmol can read many file types, including PDB, CIF,
SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian,
GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other
quantum chemistry programs. Files can be transferred directly from several
databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple
files can be loaded and compared. A rich scripting language and a well-developed
web API allow easy customization of the user interface. Features include
interactive animation and linear morphing. Jmol interfaces well with JSpecView
for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD
programs for 3D printing (VRML export).
See also: https://sourceforge.net/projects/jmol/
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/science/jmol/ && make install clean
- To add the package, run one of these commands:
- pkg install science/jmol
- pkg install Jmol
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: Jmol
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1689826989
SHA256 (Jmol-16.1.25-full.tar.gz) = 2a1ca1db73672c97843873e2d0abc901d8c5bb0e4a5042ac3890a44b04fb0467
SIZE (Jmol-16.1.25-full.tar.gz) = 131757647
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- unzip>0 : archivers/unzip
- java : java/openjdk17
- ant : devel/apache-ant
- Runtime dependencies:
-
- java : java/openjdk17
- This port is required by:
- for Build
-
Deleted ports which required this port:
- for Run
-
Deleted ports which required this port:
- * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options:- ===> The following configuration options are available for Jmol-16.1.25_1:
DOCS=on: Build and/or install documentation
JSMOL=on: Install JSmol
===> Use 'make config' to modify these settings
- Options name:
- science_jmol
- USES:
- java:ant,run
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
14.29.46
07 Jun 2019 05:59:52
  |
yuri |
science/jmol: Update 14.29.42 -> 14.29.46
Reported by: portscout |
14.29.42
02 May 2019 07:59:18
|
yuri |
science/jmol: Update 14.29.40 -> 14.29.42
Reported by: portscout |
14.29.40
28 Apr 2019 07:01:08
|
yuri |
science/jmol: Update to 14.29.38 -> 14.29.40
Reported by: portscout |
14.29.38
22 Apr 2019 06:56:13
|
yuri |
science/jmol: Update 14.29.37 -> 14.29.38
Reported by: portscout |
14.29.37
20 Apr 2019 15:41:33
|
yuri |
science/jmol: Update 14.29.36 -> 14.29.37
Reported by: portscout |
14.29.36
13 Apr 2019 14:31:02
|
yuri |
science/jmol: Update 14.29.34 -> 14.29.36
Reported by: portscout |
14.29.34
07 Apr 2019 01:28:15
|
yuri |
science/jmol: Update 14.29.32 -> 14.29.34
Reported by: portscout |
14.29.32
30 Mar 2019 18:34:00
|
yuri |
science/jmol: Update 14.29.31 -> 14.29.32
Also add -Djava.awt.headless=true to Jave VM args.
Reported by: portscout |
14.29.31_1
13 Feb 2019 10:21:20
|
yuri |
science/jmol: Add the executable jmoldata for headless operation |
14.29.31
13 Feb 2019 09:51:05
|
yuri |
Re-add: science/jmol: Java 3D viewer for chemical structures |
13.2.3
04 Jul 2016 20:48:24
|
rene |
Remove expired ports without open PRs:
2016-07-04 security/openpgpsdk: Broken for more than 6 months
2016-07-04 security/radiusniff: Broken for more than 6 months
2016-07-04 security/pear-Auth_OpenID: Broken for more than 6 months
2016-07-04 security/sshit: Broken for more than 6 months
2016-07-04 security/ifd-slb_rf60: Broken for more than 6 months
2016-07-04 security/rainbowcrack: Broken for more than 6 months
2016-07-04 security/vlog: Broken for more than 6 months
2016-07-04 security/cryptstring: Broken for more than 6 months
2016-07-04 x11/libdnd: Broken for more than 6 months
2016-07-04 x11/xlupe: Broken for more than 6 months
2016-07-04 x11/xco: Broken for more than 6 months
2016-07-04 x11/xclick: Broken for more than 6 months
2016-07-04 devel/ocfpcsc: Broken for more than 6 months
2016-07-04 devel/dits: Broken for more than 6 months (Only the first 15 lines of the commit message are shown above  ) |
13.2.3
03 Jun 2016 16:44:58
|
antoine |
Deprecate ports broken for more than 6 months |
13.2.3
09 Nov 2015 12:59:04
|
antoine |
Mark a few ports BROKEN: unfetchable |
13.2.3
08 Oct 2015 15:12:22
|
olgeni |
Remove trailing whitespace from Makefiles, M-X. |
13.2.3
12 Nov 2014 18:48:53
|
antoine |
Cleanup plist |
13.2.3
07 Nov 2013 16:53:33
|
pawel |
- Update to version 13.2.3 [1]
- Remove leading article, revise capitalization in COMMENT
- Convert to new options framework
- Support staging
- Add launch script and desktop entry file
PR: ports/182482 [1]
Submitted by: Max Sterling <maxclsb@gmail.com> [1] |
12.2.23
20 Sep 2013 22:48:31
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
science) |
12.2.23
07 Sep 2013 17:20:21
|
sunpoet |
- Use single space after WWW: |
12.2.23
10 Dec 2012 13:43:44
|
bapt |
Decommissioning java 1.5 (EOLed since October 2009):
suppress any reference to JAVA_VERSION= 1.5+ (part3) |
12.2.23
10 Oct 2012 06:48:32
|
wen |
- Trim Makefile headers
- Reset maintainer to ports@ |
12.2.23
26 Apr 2012 01:15:18
|
wen |
- Update to 12.2.23
PR: 167297
Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> |
11.8.24
03 Jul 2011 13:22:25
|
ohauer |
- remove MD5 |
11.8.24
03 Jun 2010 08:22:14
|
wen |
- Update to 11.8.24 |
11.8.7
09 Oct 2009 13:07:57
|
wen |
- Update to 11.8.7
- Update my mail address to FreeBSD
Approved by: miwi(mentor) |
11.6.17
22 Aug 2009 00:35:32
 |
amdmi3 |
- Switch SourceForge ports to the new File Release System: categories starting
with P,R,S |
11.6.17
16 Mar 2009 21:42:23
|
miwi |
- Update to 11.6.17
PR: 131733
Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) |
11.6
15 Oct 2008 16:16:51
|
miwi |
- Update to 11.6
PR: 128047
Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) |
11.4.6
29 Aug 2008 14:43:16
|
miwi |
- Fix a typo
PR: 126647
Submitted by: Wen heping <wenheping@gmail.com> (maintainer) |
11.4.6
18 Aug 2008 21:51:04
|
miwi |
- Update to 11.4.6
PR: 126586
Submitted by: Wen heping <wenheping@gmail.com> (maintainer) |
11.4.4_1
20 Jun 2008 14:01:18
|
miwi |
- Update to 11.4.4
- Respect NOPORTEXAMPLE/NOPORTDOCS [1]
PR: 124695
Submitted by: Wen heping <wenheping@gmail.com>
miwi [1] |
11.4.2_1
06 Jun 2008 13:59:05
|
edwin |
Bump portrevision due to upgrade of devel/gettext.
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav) |
11.4.2
17 May 2008 23:04:44
|
miwi |
Jmol is a Java molecular viewer for
three-dimensional chemical structures.
Features include reading a variety
of file types and output from quantum
chemistry programs, and animation of
multi-frame files and computed normal
modes from quantum programs.
WWW: http://sourceforge.net/projects/jmol/
PR: ports/123631
Submitted by: Wen heping <wenheping at gmail.com> |
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