notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details
libccp4 Protein X-ray crystallography toolkit
6.5.1_5 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 6.5.1_5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-08 00:25:10
Last Update: 2023-04-23 09:09:58
Commit Hash: 8d3e020
Also Listed In: education
License: GPLv3 LGPL3
WWW:
https://www.ccp4.ac.uk/
Description:
CCP4 exists to produce and support a world-leading, integrated suite of programs that allows researchers to determine macromolecular structures by X-ray crystallography, and other biophysical techniques. CCP4 aims to develop and support the development of cutting edge approaches to experimental determination and analysis of protein structure, and integrate these approaches into the suite. CCP4 is a community based resource that supports the widest possible researcher community, embracing academic, not for profit, and for profit research. CCP4 aims to play a key role in the education and training of scientists in experimental structural biology. It encourages the wide dissemination of new ideas, techniques and practice.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (52 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/libccp4-6.5.1_5/catalog.mk
  3. /usr/local/share/licenses/libccp4-6.5.1_5/LICENSE
  4. /usr/local/share/licenses/libccp4-6.5.1_5/GPLv3
  5. /usr/local/share/licenses/libccp4-6.5.1_5/LGPL3
  6. include/ccp4/ccp4_array.h
  7. include/ccp4/ccp4_errno.h
  8. include/ccp4/ccp4_file_err.h
  9. include/ccp4/ccp4_fortran.h
  10. include/ccp4/ccp4_general.h
  11. include/ccp4/ccp4_parser.h
  12. include/ccp4/ccp4_program.h
  13. include/ccp4/ccp4_spg.h
  14. include/ccp4/ccp4_sysdep.h
  15. include/ccp4/ccp4_types.h
  16. include/ccp4/ccp4_unitcell.h
  17. include/ccp4/ccp4_utils.h
  18. include/ccp4/ccp4_vars.h
  19. include/ccp4/cmap_data.h
  20. include/ccp4/cmap_errno.h
  21. include/ccp4/cmap_header.h
  22. include/ccp4/cmap_labels.h
  23. include/ccp4/cmap_skew.h
  24. include/ccp4/cmap_stats.h
  25. include/ccp4/cmaplib.h
  26. include/ccp4/cmaplib_f.h
  27. include/ccp4/cmtzlib.h
  28. include/ccp4/csymlib.h
  29. include/ccp4/cvecmat.h
  30. include/ccp4/library_file.h
  31. include/ccp4/mtzdata.h
  32. include/ccp4/overview.h
  33. include/ccp4/pack_c.h
  34. include/ccp4/w32mvs.h
  35. lib/libccp4c.so
  36. lib/libccp4c.so.0
  37. lib/libccp4c.so.0.0.0
  38. lib/libccp4f.so
  39. lib/libccp4f.so.0
  40. lib/libccp4f.so.0.0.0
  41. libdata/pkgconfig/libccp4c.pc
  42. libdata/pkgconfig/libccp4f.pc
  43. share/atomsf.lib
  44. share/atomsf_electron.lib
  45. share/atomsf_neutron.lib
  46. share/ccp4/ccp4-config.cmake
  47. share/font84.ascii
  48. share/syminfo.lib
  49. share/symop.lib
  50. @owner
  51. @group
  52. @mode
Collapse this list.
Dependency lines:
  • libccp4>0:science/libccp4
To install the port:
cd /usr/ports/science/libccp4/ && make install clean
To add the package, run one of these commands:
  • pkg install science/libccp4
  • pkg install libccp4
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libccp4
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1531007069 SHA256 (libccp4-6.5.1.tar.gz) = 280b473d950cdf8837ef66147ec581104298b892399bd856f13b096f2395dbe5 SIZE (libccp4-6.5.1.tar.gz) = 947521

Packages (timestamps in pop-ups are UTC):
libccp4
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-6.5.1_5-6.5.1_56.5.1_5-6.5.1_4-
FreeBSD:13:quarterly-6.5.1_5-6.5.1_56.5.1_5-6.5.1_56.5.1_5
FreeBSD:14:latest-6.5.1_5-6.5.1_56.5.1_5---
FreeBSD:14:quarterly-6.5.1_5-6.5.1_56.5.1_5-6.5.1_56.5.1_5
FreeBSD:15:latest-6.5.1_5n/a6.5.1_5n/a-6.5.1_56.5.1_5
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gfortran12 : lang/gcc12
  2. gmake>=4.3 : devel/gmake
  3. as : devel/binutils
Runtime dependencies:
  1. gfortran12 : lang/gcc12
Library dependencies:
  1. libmmdb2.so : science/mmdb2
This port is required by:
for Libraries
  1. science/clipper
  2. science/libssm

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/coot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
No options to configure
Options name:
science_libccp4
USES:
fortran gmake libtool localbase:ldflags
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ccp4.ac.uk/opensource/
Collapse this list.

Number of commits found: 13

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
6.5.1_5
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
6.5.1_4
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
6.5.1_4
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
6.5.1_4
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
6.5.1_4
20 Nov 2020 07:16:06
Revision:555738Original commit files touched by this commit
adamw search for other commits by this committer
Add education virtual category

PR:		248402
Submitted by:	PauAmma
6.5.1_4
04 Jul 2020 11:10:29
Revision:541193Original commit files touched by this commit
tobik search for other commits by this committer
science/libccp4: Unbreak build with GCC 10

fortran/pack_f.f:109:28:

   45 |       call pack_wordimage_f(data, x, y, filnarray)
      |                            2
......
  109 |       call pack_wordimage_f(data, x, y, filnarray)
      |                            1
Error: Type mismatch between actual argument at (1) and actual argument at (2)
(INTEGER(4)/INTEGER(2)).
fortran/pack_f.f:141:30:

   77 |       call v2pack_wordimage_f(data, x, y, filnarray)
      |                              2
......
  141 |       call v2pack_wordimage_f(data, x, y, filnarray)
      |                              1
Error: Type mismatch between actual argument at (1) and actual argument at (2)
(INTEGER(4)/INTEGER(2)).

http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/libccp4-6.5.1_4.log

PR:		246700
6.5.1_4
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
6.5.1_3
22 Apr 2019 13:16:34
Revision:499638Original commit files touched by this commit
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
6.5.1_2
29 Mar 2019 21:06:52
Revision:497201Original commit files touched by this commit
linimon search for other commits by this committer
Mark as broken on aarch64:

  ccp4/ccp4_sysdep.h:244:4: error: "Can't determine machine number format"

Approved by:	portmgr (tier-2 blanket)
6.5.1_2
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
6.5.1_1
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
6.5.1
08 Jul 2018 00:24:55
Revision:474147Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/libccp4: Protein X-ray crystallography toolkit

Number of commits found: 13