*/*: Bump PORTVERSION of math/nlopt consumers

..due to shlib change

*/*: bump PORTREVISION after the upgrade to OpenBLAS

science/mpb: Move man pages to share/man

Approved by:	portmgr (blanket)

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

*/*: adapt to new guile framework

 - change all ports using guile to USES=guile
 - flavorize guile-lib, guile-cairo, slib-guile

PR:		260960
Reported by:	Martin Neubauer <m.ne@gmx.net>
Approved by:	bofh
Differential Revision:	https://reviews.freebsd.org/D40194

science/mpb: Additions and improvements

- Add shared library
- Remove NLOPT option
- Add test target
- Pet portlint

Contrary to the patch from the PR, USE_GCC=yes is kept, otherwise errors under
CURRENT (with LLVM15).

Co-authored-by:	Rainer Hurling <rhurlin@FreeBSD.org>
PR:		270105

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

Remove # $FreeBSD$ from Makefiles.

science/mpb: Update to 1.11.1

Changelog: https://github.com/NanoComp/mpb/blob/master/NEWS.md

- Update from version 1.5 to 1.11.1
- Change MASTER_SITES to Github releases
- Remove MAKE_JOBS_UNSAFE
- Change dependency math/fftw to math/fftw3
- Change dependency math/blas to math/openblas
- Add devel/boehm-gc-threaded to LIB_DEPENDS
- Add USES=readline
- Use GCC compiler because of Fortran code
- Reorder Makefile
- Add option for OpenMP
- Remove post-patch target
- Add post-install target to install examples
- Change URL in pkg-descr
- Update pkg-plist

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D27031

Change the maintainer entry in rhurlin's ports

After I got a commit bit for ports, it is time now to change the maintainers
entry in all 'owned' ports.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D26398

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Update Guile to version 2.2.5, modern stable version, and fix dependent
ports to build against it.  Most changes are rather minor and mechanical
except for the devel/gdb (obtained via their bugtracker [1], courtesy of
Doug Evans).  One port (science/meep) I had to mark BROKEN after fixing
it proved to be very tedious and actually unreliable.  It is very old,
there are newer versions available so it should be fixed by updating.

One port (devel/libruin) had revealed a bug in the new Guile code (an
auxiliary script, really) that had to be worked-round; reference to the
problematic upstream commit is provided in the patch.

PR:		229613
Exp-run by:	antoine

[1] https://sourceware.org/bugzilla/show_bug.cgi?id=21104#c8

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

science/mpb: back out r459622 after base r328286

For a short time LLD_BOOTSTRAP (on amd64) broke many USES=fortran
consumers but now that it's fixed the workaround can go away.
-CURRENT support in ports is primarily limited to the latest tip,
not an arbitrary old version.

PR:		225230
Tested by:	Rainer Hurling (maintainer)

Fix the build on FreeBSD 12+ by using a current version of GCC which
is already used by some of the dependencies.

This avoids build errors of the following kind:

  /lib/libgcc_s.so.1: version GCC_4.6.0 required by
  /usr/local/lib/gcc6/libgfortran.so.3 not found

Submitted by:	maintainer (Rainer Hurling <rhurlin@gwdg.de>)
PR:		225230

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

3 ports categories: Remove $PTHREAD_LIBS

Categories: print, science, emulators

approved by:	PTHREAD blanket

- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

science/mpb: put option helpers at the correct place

Submitted by:	antoine via #bsdports

Resurrect science/mpb, pass maintainership to PR submitter.
- update to 1.5
- change to lang/guile2
- fix up USES and post-patch
- add optional dependency on math/nlopt
- install header files

PR:		196179
Submitted by:	Rainer Hurling

Remove expired ports:
2014-12-27 games/secretmaryochronicles-music: Depends on expiring
games/secretmaryochronicles
2014-12-27 science/mpb: Broken for more than 6 months
2014-12-27 x11-fm/pbi-thumbnailer: Broken for more than 6 months

Deprecated ports broken for more than 6 months

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

lang/guile:
- Add USES=libtool and bump dependent ports
- Replace Makefile.* patches with USES=pathfix
- Replace config.h.in patch with USE_AUTOTOOLS=autoheader
- Avoid automake by touching Makefile.in

Approved by:	portmgr (implicit, bump unstaged port)

Mark BROKEN: Fails to build

cc -DHAVE_CONFIG_H -I../util -I../matrices -I. -I/usr/local/include
-I/usr/local/include -I/usr/local/include -D_THREAD_SAFE -pthread -c -O2 -pipe
-fno-strict-aliasing -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith
-Wcast-align -pedantic matrixio.c -o matrixio.o
In file included from /usr/local/include/hdf5.h:24,
                 from matrixio.h:24,
                 from matrixio.c:34:
/usr/local/include/H5public.h:151: warning: ISO C90 does not support 'long long'
/usr/local/include/H5public.h:152: warning: ISO C90 does not support 'long long'
In file included from /usr/local/include/hdf5.h:45,
                 from matrixio.h:24,
                 from matrixio.c:34:
/usr/local/include/H5FDlog.h:65: warning: ISO C90 does not support 'long long'
matrixio.c: In function 'write_attr':
matrixio.c:91: error: too few arguments to function 'H5Dcreate2'
matrixio.c:97: error: too few arguments to function 'H5Acreate2'

Reported by:	pkg-fallout

- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

- New LIB_DEPENDS syntax.
- USES=fortran.
- Replace WITH_ATLAS with ATLAS option.
- Staging.

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Mark seven unmaintained ports as jobs unsafe.

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

. add license (GPLv2);
. bump PORTREVISION;
. remove shlib ABI version numbers from LIB_DEPENDS;
. trim Makefile headers.

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

- Chase guile shared lib bump
- Add an entry to UPDATING

 - remove MD5

- Bump PORTREVISION to chase the update of libctl

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

- Chase lang/guile shlib bump

No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV, this is now done via
Mk/bsd.gcc.mk.  And for this port, CONFIGURE_ENV was bogus to begin with.

Submitted by:   Steven Kreuzer <skreuzer@exit2shell.com>

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

- Chase lang/guile share library version bump (.18 -> .19)
- Bump PORTREVISION

PR:             ports/125435

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

 - Chase libctl version bump

Approved by:    miwi (mentor)

Chase libguile shared lib version.

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

In preparation to deprecate shells/bash2:
. change BUILD_DEPENDS shells/bash2 -> shells/bash.

* Migrate to gfortran.
* Bump port revision.
* Use gfortran compiled atlas/blas/lapack.

Remove USE_REINPLACE from all categories starting with S

Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)

- Add SHA256

Chase repomove graphics/hdf* -> science/hdf*

SIZEify.

- Make it do actually something useful.

  Make science/mpb has been pretty much useless because it wasn't
  correctly linked with hdf5 as it appears in the Makefile.  Now this
  is properly done by linking pthread lib too, which is required by
  hdf5.  Also, correctly link with ATLAS version of LAPACK.

PR:             ports/58337
Submitted by:   AMAKAWA Shuhei <sa264@cam.ac.uk>

Chase guile's shared lib version.

add mpb 1.4.2
MIT Photonic-Bands