This project aims to provide an open-source, modular, flexible, molecular
modelling and visualization environment.
Molecular structures are a central aspect of OpenStructure and a rich
understanding of macromolecular structure datasets with access to atoms,
residues, chains, bonds and torsions is offered.
Features:
* Intuitive representation of structural subsets, so-called EntityViews, that
can be created with a dedicated query language or constructed manually for
more complex cases.
* Real-time rendering of molecular structures
* Interactive Analysis of Trajectories
* Support for common file formats such as PDB, mmCIF, SDF, PQR
* Read more about molecular structures in OpenStructure
WWW: https://openstructure.org/
Qt4 deprecation: Remove Qt4 and its consumes.
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above )
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
Mark QT4 ports/functionality for removal on 2019-03-15
While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.
Submitted by: tcberner
Reviewed by: adridg, jhale, rene, tcberner
Approved by: portmgr (implicit, flavor hook)
Differential Revision: https://reviews.freebsd.org/D17741
pyqt: Change install directories for Python flavor support
* PyQt could not be installed for multiple Python versions at
the same time, as there were conflicting files.
This patch creates Python-version versioned directories for
all these, and further installs binaries with a version number.
* Note, there might be some hickups for software that depends on
on of the .so's provided by PyQt5, which might not be found
anymore autmotically, and maybe need some LD-flaggery.
* Update PyQt5 to 5.10.1
* Mark www/py-qt5-webengine broken. It is unforuntately no longer
compatible with the old qt5-webengine-5.9.4 we ship.
PR: 232745
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D8714
Change x11/xorgproto to become a build dep
Change x11/xorgproto to become a build time dependency when added to
USE_XORG. Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.
PR: 230909
Reviewed by: eadler
Approved by: portmgr (antoine)
Obtained
from: https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run: antoine
Differential Revision: https://reviews.freebsd.org/D16906
science/openstructure: Add USE_CXXSTD=c++98; Use MASTER_SITES instead of
USE_GITLAB
USE_GITLAB doesn't work in this case because it requires GL_COMMIT while only
DISTVERSION
should be sufficient.
USE_CXXSTD=c++98 is used because -DCMAKE_CXX_FLAGS='-std=c++98' os overridden.
Reported by: tobik
science/openstructure: Fix build by using -std=c++98
The upstream recommended to use -std=c++98 to fix C++ errors on CURRENT.
Also switch to USE_GITLAB.
Reported by: fallout (build failure)
Reported by: mat (USE_GITLAB use)
