science/paraview: fix build on 16-Current

Reported by:	pkg-fallout

science/paraview: Fix build with gdal 3.13.0+

/wrkdirs/usr/ports/science/paraview/work/ParaView-v6.0.1/VTK/IO/GDAL/vtkGDALRasterReader.cxx:185:12:
error: cannot initialize a variable of type 'char **' with an rvalue of type
'CSLConstList' (aka 'const char *const *')
  185 |     char** papszMetaData = GDALGetMetadata(this->GDALData, nullptr);
      |            ^               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/paraview/work/ParaView-v6.0.1/VTK/IO/GDAL/vtkGDALRasterReader.cxx:881:10:
error: cannot initialize a variable of type 'char **' with an rvalue of type
'CSLConstList' (aka 'const char *const *')
  881 |   char** papszMetadata = GDALGetMetadata(this->Impl->GDALData,
domain.c_str());
      |          ^              
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 errors generated.

Approved by:	portmgr (blanket)

graphics/gdal: Update to 3.13.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/OSGeo/gdal/releases
		https://github.com/OSGeo/gdal/blob/release/3.13/NEWS.md

graphics/proj: bump dependends ports

*/*: bump PORTREVISION after switching to NumPy 2.x

*/*: Switch to NumPy 2.x

PR:		294328
Exp-run:	antoine

graphics/gdal: Update to 3.12.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/OSGeo/gdal/releases
		https://github.com/OSGeo/gdal/blob/release/3.12/NEWS.md

python.mk: retire ${PYNUMPY}

With both math/py-numpy (2) and math/py-numpy1, the variable stopped
making sense. Also remove the upper version bound.

math/py-numpy: switch all consumers to math/py-numpy1

...and bump PORTREVISIONs of consumers with hard RUN_DEPENDS

PR: 281470

*/*: Bump all devel/protobuf consumers

They must always be bumped after devel/protobuf because it include
following files whose filenames contain %%PORTVERSION%%. Consequently,
the shlib will always change when PORTVERSION is increased.

lib/libprotobuf-lite.so.%%PORTVERSION%%.0
lib/libprotobuf.so.%%PORTVERSION%%.0
lib/libprotoc.so.%%PORTVERSION%%.0

Approved by:	portmgr (blanket; fixing consumers)

math/vtk9: update 9.5.2 → 9.6.0

science/paraview: upgrade to 6.0.1

Releases notes at https://www.kitware.com/paraview-6-0-0-release-notes/
and https://www.kitware.com/paraview-6-0-1-release-notes/

Also switch from MPICH to OpenMPI, to be consistent with VTK.

*/*: De-orbit alias.mk

Mk/Uses/alias.mk was an attempt for compat with DPorts, but has rotted.
This feature was never documented in the PHB, so there is no work to
be done by the docs@ team.

Nothing against DragonFly, but if DPorts still needs FreeBSD 9
support, they really should work that out with upstream projects.

Ultimately, we don't need to keep carrying this outdated feature that
doesn't affect us.

*/*: Chase multimedia/libtheora shlib bump

science/paraview: Fix build with FFMpeg 8

Backport upstream commits from VTK to fix build with FFMpeg 8.

Approved by:	portmgr (blanket)

multimedia/ffmpeg: bump revision to chase lib version change