science/py-DendroPy: Update to 5.0.1

science/py-DendroPy: Update to 5.0.0

all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>

science/py-DendroPy: Update to 4.6.1

science/py-DendroPy: Update to 4.6.0

Take maintainership

science/py-DendroPy: Back to @ports

*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

science/py-DendroPy: Update to 4.5.2

PR:		263706
Reported by:	yuri@
Approved by:	maintainer(timeout, >1 month)

Remove # $FreeBSD$ from Makefiles.

Drop python 2.7 support from a few ports

With hat:	portmgr

Convert to UCL & cleanup pkg-message (categories s)

Fix packaging with python 3.x

Reported by:	pkg-fallout

Update to 4.4.0

%%PYTHON_PYOEXTENSION%% is harmful in python2 style plists

Pointy hat:	cs@

Update to 4.3.0

Fix packaging with python 3 by using py3kplist

Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the

Update to 4.2.0

Convert tab after WWW: in pkg-descrs to single space as per PHB

Approved by:	portmgr blanket

Update to 4.1.0

Update to 4.0.3

- Don't cat pkg-message from Makefiles

Approved by:	portmgr blanket

Cleanup plist

- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)

- Support staging
- Minor edits

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

Update to 3.12.0

Update to 3.11.0

Update to 3.10.1

Approved by:    glarkin@ (mentor, implicit)

Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)

- Updated to 3.9.0
  ChangeLog: http://packages.python.org/DendroPy/changes.html

PR:             ports/159157
Submitted by:   C-S <c-s@c-s.li> (maintainer)

- Update to 3.8.1

- Update to 3.7.1

- Updated to 3.7.0
- Passed maintainership to submitter
- Switched to BSD license to adhere to upstream package

PR:             ports/151178
Submitted by:   Carlo Strub <c-s at c-s dot li>

- Update to 3.6.1

- Update to 3.5.0

- Update to 3.4.1

PR:             ports/149415
Submitted by:   Frederic Culot <frederic AT culot.org>

- Update to 3.4.0

Feature safe:   yes

- Update to 3.3.0
- Reset maintainer

- Update to 3.2.0

- Update to 3.1.3

Feature safe:   yes

- Update to 3.1.2

- Update to 3.0.7

- Update to 3.0.5

py-DendroPy is a python library for phylogenetic scripting,
simulation, data processing and manipulation.

WWW:    http://packages.python.org/DendroPy/