| Port details |
- py-dipy Python toolbox for analysis of MR diffusion imaging
- 1.9.0 science
 =2      1.9.0Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2021-01-21 03:22:01
- Last Update: 2024-04-22 08:25:11
- Commit Hash: 5688495
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: python
- License: BSD3CLAUSE
- WWW:
- https://dipy.org/
- Description:
- DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods
for spatial normalization, signal processing, machine learning, statistical
analysis and visualization of medical images. Additionally, it contains
specialized methods for computational anatomy including diffusion, perfusion and
structural imaging.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}dipy>0:science/py-dipy@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-dipy/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-dipy
- pkg install py39-dipy
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-dipy listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-dipy
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1713770534
SHA256 (dipy-1.9.0.tar.gz) = eb0f7a211202d48f30961743528c86ec9804fcba8ca440a7484e0a113fa2cc4f
SIZE (dipy-1.9.0.tar.gz) = 6518336
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-meson-python>0 : devel/meson-python@py39
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-wheel>0 : devel/py-wheel@py39
- cython-3.9 : lang/cython@py39
- python3.9 : lang/python39
- py39-build>=0 : devel/py-build@py39
- py39-installer>=0 : devel/py-installer@py39
- Test dependencies:
-
- py39-pandas>0 : math/py-pandas@py39
- py39-scikit-learn>0 : science/py-scikit-learn@py39
- py39-statsmodels>0 : math/py-statsmodels@py39
- py39-tables>0 : devel/py-tables@py39
- py39-fury>0 : graphics/py-fury@py39
- py39-matplotlib>0 : math/py-matplotlib@py39
- py39-cvxpy>0 : math/py-cvxpy@py39
- py39-pytest>=7,1 : devel/py-pytest@py39
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-h5py>=3.1.0 : science/py-h5py@py39
- py39-nibabel>=3.0.0 : science/py-nibabel@py39
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-packaging>=21 : devel/py-packaging@py39
- py39-scipy>=1.8 : science/py-scipy@py39
- py39-tqdm>=4.30.0 : misc/py-tqdm@py39
- py39-trx-python>=0.2.9 : science/py-trx-python@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- science_py-dipy
- USES:
- python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.9.0
22 Apr 2024 08:25:11
 |
Yuri Victorovich (yuri) |
science/py-dipy: update 1.8.0 → 1.9.0
Reported by: portscout |
1.8.0
17 Dec 2023 19:01:49
|
Yuri Victorovich (yuri) |
science/py-dipy: update 1.7.0 → 1.8.0
Reported by: portscout |
1.7.0
27 Jun 2023 19:34:34
|
Rene Ladan (rene) |
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568> |
1.7.0
08 Jun 2023 02:40:00
|
Yuri Victorovich (yuri) |
science/py-dipy: Update 1.6.0 → 1.7.0
Also add the test target.
Reported by: portscout |
1.6.0_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
1.6.0
19 Jan 2023 02:47:12
|
Yuri Victorovich (yuri) |
science/py-dipy: Update 1.5.0 -> 1.6.0
Reported by: portscout |
1.5.0
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.5.0
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.5.0
24 Apr 2022 19:42:21
|
Yuri Victorovich (yuri) |
science/py-dipy: Update 1.4.1 -> 1.5.0
Reported by: portscout |
1.4.1
06 May 2021 17:59:23
|
Yuri Victorovich (yuri) |
science/py-dipy: Update 1.4.0 -> 1.4.1
Reported by: portscout |
1.4.0
18 Apr 2021 05:44:04
|
Po-Chuan Hsieh (sunpoet) |
science/py-h5py: Update to 3.2.1
- Update USES=python of dependent ports
Changes: https://github.com/h5py/h5py/releases
https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.2.rst |
1.4.0
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.4.0
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.4.0
15 Mar 2021 07:02:33
 |
yuri |
science/py-dipy: Update 1.3.0 -> 1.4.0 |
1.3.0
02 Mar 2021 14:31:24
|
kai |
science/py-dipy: Fix pkg-plist issues with non-default Python versions
PR: 253815
Approved by: portmgr (build fix) |
1.3.0
21 Jan 2021 03:21:18
|
yuri |
New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging |
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