notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)Want a good monitor light? See my photosAll times are UTC		 Ukraine
Port details
py-gsd GSD (General Simulation Data) file format for Python
3.4.1 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.3.2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-13 20:32:53
Last Update: 2024-10-23 09:44:45
Commit Hash: c9e9d2c
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: python
License: BSD2CLAUSE
WWW:
https://bitbucket.org/glotzer/gsd/wiki/Home
Description:
A library to read and write GSD (General Simulation Data) file format. The package also contains a python module that reads and writes hoomd schema gsd files with an easy to use syntax. Features: * Efficiently store many frames of data from simulation runs. * High performance file read and write. * Support arbitrary chunks of data in each frame (position, orientation, type, etc...). * Append frames to an existing file with a monotonically increasing frame number. * Resilient to job kills. * Variable number of named chunks in each frame. * Variable size of chunks in each frame. * Each chunk identifies data type. * Common use cases: NxM arrays in double, float, int, char types. * Generic use case: binary blob of N bytes. * Easy to integrate into other tools with python, or a C API (< 1k lines). * Fast random access to frames.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}gsd>0:science/py-gsd@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-gsd/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-gsd
  • pkg install py311-gsd
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-gsd listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py311-gsd
Package flavors (<flavor>: <package>)
  • py311: py311-gsd
distinfo:
TIMESTAMP = 1729667935 SHA256 (gsd-3.4.1.tar.gz) = 468e513da06bea35efc7013d2341fe2bd2e3fd3be4a9a600f71b4d31e5b2192a SIZE (gsd-3.4.1.tar.gz) = 185315
Packages (timestamps in pop-ups are UTC):
py39-gsd
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------3.1.1-
FreeBSD:14:latest--------
FreeBSD:14:quarterly------3.1.1-
FreeBSD:15:latest--n/a-n/a-3.1.13.1.1
 

py311-gsd
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.4.13.4.1-3.4.13.4.1---
FreeBSD:13:quarterly3.4.13.4.1-3.4.13.4.1---
FreeBSD:14:latest3.4.13.4.1-3.4.13.4.1---
FreeBSD:14:quarterly3.4.13.4.1-3.4.13.4.1---
FreeBSD:15:latest3.4.13.4.1n/a3.4.1n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  2. cython-3.11 : lang/cython@py311
  3. py311-setuptools>=63.1.0 : devel/py-setuptools@py311
  4. python3.11 : lang/python311
Test dependencies:
  1. py311-pytest>=7,1 : devel/py-pytest@py311
  2. python3.11 : lang/python311
Runtime dependencies:
  1. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  2. py311-setuptools>=63.1.0 : devel/py-setuptools@py311
  3. python3.11 : lang/python311
This port is required by:
for Run
  1. science/py-MDAnalysis
Configuration Options:
No options to configure
Options name:
science_py-gsd
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/g/gsd/
  2. https://pypi.org/packages/source/g/gsd/
Collapse this list.

Number of commits found: 38

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.4.1
23 Oct 2024 09:44:45
commit hash: c9e9d2c21ff19e7190c7436f9564b2ed8704c8aacommit hash: c9e9d2c21ff19e7190c7436f9564b2ed8704c8aacommit hash: c9e9d2c21ff19e7190c7436f9564b2ed8704c8aacommit hash: c9e9d2c21ff19e7190c7436f9564b2ed8704c8aa files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: update 3.3.2 → 3.4.1

Reported by:	portscout
3.3.2
16 Sep 2024 08:32:39
commit hash: 722418d888d43aaa5242872927c82d781951c466commit hash: 722418d888d43aaa5242872927c82d781951c466commit hash: 722418d888d43aaa5242872927c82d781951c466commit hash: 722418d888d43aaa5242872927c82d781951c466 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: update 3.1.1 → 3.3.2

Reported by:	portscout
3.1.1
04 Aug 2023 09:07:12
commit hash: 724c4354c16e1069f0be3a23cdd54544d874692ccommit hash: 724c4354c16e1069f0be3a23cdd54544d874692ccommit hash: 724c4354c16e1069f0be3a23cdd54544d874692ccommit hash: 724c4354c16e1069f0be3a23cdd54544d874692c files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 3.1.0 → 3.1.1

Reported by:	portscout
3.1.0
01 Aug 2023 09:43:04
commit hash: a6eebc66254427cd481774a438a6701f20d2be0ccommit hash: a6eebc66254427cd481774a438a6701f20d2be0ccommit hash: a6eebc66254427cd481774a438a6701f20d2be0ccommit hash: a6eebc66254427cd481774a438a6701f20d2be0c files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 3.0.1 → 3.1.0

Reported by:	portscout
3.0.1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit		 Rene Ladan (rene) search for other commits by this committer 
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
3.0.1
21 Jun 2023 07:44:29
commit hash: 0d0e1d4c599b67346cfb4053e5d640f353106f6ccommit hash: 0d0e1d4c599b67346cfb4053e5d640f353106f6ccommit hash: 0d0e1d4c599b67346cfb4053e5d640f353106f6ccommit hash: 0d0e1d4c599b67346cfb4053e5d640f353106f6c files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 3.0.0 → 3.0.1

Reported by:	portscout
3.0.0
20 Jun 2023 03:55:04
commit hash: 084942760a1ff2ae69233e4dd156bb368aa2e442commit hash: 084942760a1ff2ae69233e4dd156bb368aa2e442commit hash: 084942760a1ff2ae69233e4dd156bb368aa2e442commit hash: 084942760a1ff2ae69233e4dd156bb368aa2e442 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.6.0 → 3.0.0

Reported by:	portscout
2.6.0_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit		 Gerald Pfeifer (gerald) search for other commits by this committer 
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
2.6.0
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit		 Dmitry Marakasov (amdmi3) search for other commits by this committer 
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.6.0
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.6.0
06 Sep 2022 16:06:06
commit hash: 6042c4ceac992d5772c2bdf2c26180388ac2e4d6commit hash: 6042c4ceac992d5772c2bdf2c26180388ac2e4d6commit hash: 6042c4ceac992d5772c2bdf2c26180388ac2e4d6commit hash: 6042c4ceac992d5772c2bdf2c26180388ac2e4d6 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Fix tests
2.6.0
04 Sep 2022 06:37:39
commit hash: 09dac76eddc8c38bdc00043a4d478940134c6386commit hash: 09dac76eddc8c38bdc00043a4d478940134c6386commit hash: 09dac76eddc8c38bdc00043a4d478940134c6386commit hash: 09dac76eddc8c38bdc00043a4d478940134c6386 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.5.3 -> 2.6.0

Reported by:	portscout
2.5.3
29 Jul 2022 08:46:45
commit hash: 2770dce6ad20afa82307732de97faaf51ef16e04commit hash: 2770dce6ad20afa82307732de97faaf51ef16e04commit hash: 2770dce6ad20afa82307732de97faaf51ef16e04commit hash: 2770dce6ad20afa82307732de97faaf51ef16e04 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.5.2 -> 2.5.3
2.5.2
20 Apr 2022 01:08:13
commit hash: 386475bc51f4f24061e7abc27fd5a89344c9d9b5commit hash: 386475bc51f4f24061e7abc27fd5a89344c9d9b5commit hash: 386475bc51f4f24061e7abc27fd5a89344c9d9b5commit hash: 386475bc51f4f24061e7abc27fd5a89344c9d9b5 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.5.1 -> 2.5.2

Reported by:	portscout
2.5.1
21 Jan 2022 10:00:30
commit hash: 21363ebd194af9b360629d11c486d66cec1bce6ecommit hash: 21363ebd194af9b360629d11c486d66cec1bce6ecommit hash: 21363ebd194af9b360629d11c486d66cec1bce6ecommit hash: 21363ebd194af9b360629d11c486d66cec1bce6e files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.5.0 -> 2.5.1

Reported by:	portscout
2.5.0
14 Oct 2021 20:08:01
commit hash: 25b2db9a7fa295d4741b27bee571a505c12d4146commit hash: 25b2db9a7fa295d4741b27bee571a505c12d4146commit hash: 25b2db9a7fa295d4741b27bee571a505c12d4146commit hash: 25b2db9a7fa295d4741b27bee571a505c12d4146 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.4.2 -> 2.5.0

Reported by:	portscout
2.4.2
18 Apr 2021 00:53:22
commit hash: e63b3ed2cc24d9a3bd90121cc2d6e243f7875901commit hash: e63b3ed2cc24d9a3bd90121cc2d6e243f7875901commit hash: e63b3ed2cc24d9a3bd90121cc2d6e243f7875901commit hash: e63b3ed2cc24d9a3bd90121cc2d6e243f7875901 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-gsd: Update 2.4.1 -> 2.4.2A

Reported by:	portscout
2.4.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.4.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
2.4.1
12 Mar 2021 10:13:36
Revision:568160Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 2.4.0 -> 2.4.1

Reported by:	portscout
2.4.0
28 Dec 2020 23:02:15
Revision:559531Original commit files touched by this commit		 antoine search for other commits by this committer 
Drop python 2.7 support from a few ports

With hat:	portmgr
2.4.0
15 Nov 2020 19:36:21
Revision:555427Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 2.3.0 -> 2.4.0
2.3.0
31 Oct 2020 08:53:53
Revision:553755Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 2.2.0 -> 2.3.0

Reported by:	portscout
2.2.0
06 Sep 2020 14:40:22
Revision:547791Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 2.1.2 -> 2.2.0
2.1.2
22 Jul 2020 00:31:55
Revision:542824Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.10.0 -> 2.1.2

Reported by:	portscout
1.10.0
03 Jan 2020 03:58:47
Revision:521895Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.9.3 -> 1.10.0

Reported by:	portscout
1.9.3
12 Oct 2019 16:47:24
Revision:514346Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.8.1 -> 1.9.3

Reported by:	portscout
1.8.1
20 Aug 2019 06:47:39
Revision:509410Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.7.0 -> 1.8.1

Reported by:	portscout
1.7.0
28 Jul 2019 03:24:31
Revision:507493Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.6.1 -> 1.7.0

Reported by:	repology
1.6.1_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit		 gerald search for other commits by this committer 
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.6.1
16 Mar 2019 16:03:11
Revision:495902Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.6.0 -> 1.6.1

Reported by:	portscout
1.6.0
21 Dec 2018 05:02:15
Revision:487950Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.5.5 -> 1.6.0

Reported by:	portscout
1.5.5_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit		 gerald search for other commits by this committer 
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.5.5
01 Dec 2018 05:35:31
Revision:486316Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.5.4 -> 1.5.5

Reported by:	portscout
1.5.4
06 Oct 2018 04:09:32
Revision:481312Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.5.3 -> 1.5.4

Reported by:	portscout
1.5.3
28 Aug 2018 15:46:05
Revision:478323Original commit files touched by this commit		 yuri search for other commits by this committer 
science/py-gsd: Update 1.5.2 -> 1.5.3

Change from CHEESESHOP to MASTER_SITE tarballs because the upstream says that
they can't fix pypi:
https://bitbucket.org/glotzer/gsd/issues/19/pypi-still-has-gsd-152
They won't fix this.

Reported by:	repology
1.5.2
13 May 2018 20:32:42
Revision:469829Original commit files touched by this commit		 yuri search for other commits by this committer 
New port: science/py-gsd: GSD (General Simulation Data) file format for Python

Number of commits found: 38
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
Security Policy
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
unitMar 03
vimMar 02
gitlabFeb 28
chromiumFeb 27
ungoogled-chromiumFeb 27
emacs*Feb 25
emacs-devel*Feb 25
emacsFeb 24
emacs-develFeb 24
eximFeb 24
chromiumFeb 20
chromiumFeb 20
chromiumFeb 20
ungoogled-chromiumFeb 20
ungoogled-chromiumFeb 20

10 vulnerabilities affecting 99 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last processed:
2025-03-03 18:27:48 UTC


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)

Calculated hourly:
Port count 33255
Broken 130
Deprecated 259
Ignore 244
Forbidden 1
Restricted 1
No CDROM 1
Vulnerable 29
Expired 16
Set to expire 214
Interactive 0
new 24 hours 2
new 48 hours4
new 7 days17
new fortnight79
new month136
Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD 		Valid HTML, CSS, and RSS. Copyright © 2000-2025 Dan Langille. All rights reserved.