| Port details |
- py-nibabel Read/write some common neuroimaging file formats
- 5.3.0 science
 =2      5.2.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2021-01-21 02:07:56
- Last Update: 2024-10-10 01:34:05
- Commit Hash: 23feee0
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: python
- License: MIT
- WWW:
- https://nipy.org/nibabel/
- Description:
- This package provides read +/- write access to some common medical and
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later),
GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, MGH and ECAT as
well as Philips PAR/REC. We can read and write FreeSurfer geometry, annotation
and morphometry files. There is some very limited support for DICOM. NiBabel is
the successor of PyNIfTI.
The various image format classes give full or selective access to header (meta)
information and access to the image data is made available via NumPy arrays.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-nibabel/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-nibabel
- pkg install py311-nibabel
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-nibabel listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-nibabel
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1728519444
SHA256 (nibabel-5.3.0.tar.gz) = 6162184e0249b317bca42b2f43c02734a51e82ebd4ca9ee6200e25648493438e
SIZE (nibabel-5.3.0.tar.gz) = 4504200
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-hatch-vcs>0 : devel/py-hatch-vcs@py311
- py311-hatchling>0 : devel/py-hatchling@py311
- python3.11 : lang/python311
- py311-build>=0 : devel/py-build@py311
- py311-installer>=0 : devel/py-installer@py311
- Test dependencies:
-
- py311-pytest-cov>0 : devel/py-pytest-cov@py311
- py311-pytest-doctestplus>0 : devel/py-pytest-doctestplus@py311
- py311-pytest-httpserver>0 : devel/py-pytest-httpserver@py311
- py311-pytest-xdist>0 : devel/py-pytest-xdist@py311
- py311-pydicom>0 : science/py-pydicom@py311
- py311-pytest>=7,1 : devel/py-pytest@py311
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-packaging>=17 : devel/py-packaging@py311
- python3.11 : lang/python311
- py311-importlib-resources>=1.1.0 : devel/py-importlib-resources@py311
- py311-typing-extensions>=4.6 : devel/py-typing-extensions@py311
- This port is required by:
- for Build
-
- science/py-trx-python
- for Run
-
- science/py-dipy
- science/py-nilearn
Configuration Options:- No options to configure
- Options name:
- science_py-nibabel
- USES:
- python:3.9+
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
5.3.0
10 Oct 2024 01:34:05
 |
Yuri Victorovich (yuri) |
science/py-nibabel: update 5.2.1 → 5.3.0
Reported by: portscout |
5.2.1
14 Apr 2024 19:07:37
|
Yuri Victorovich (yuri) |
science/py-nibabel: update 5.2.0 → 5.2.1
Reported by: portscout |
5.2.0_1
12 Dec 2023 21:14:13
|
Yuri Victorovich (yuri) |
science/py-nibabel: Fix the failing test |
5.2.0
12 Dec 2023 21:14:13
|
Yuri Victorovich (yuri) |
science/py-nibabel: update 5.1.0 → 5.2.0
Reported by: portscout |
5.1.0
27 Jun 2023 07:46:41
|
Yuri Victorovich (yuri) |
science/py-nibabel: Add comment |
5.1.0
27 Jun 2023 04:41:40
|
Yuri Victorovich (yuri) |
science/py-nibabel: Update 3.2.2 → 5.1.0
Reported by: portscout |
3.2.2_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
3.2.2
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
3.2.2
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
3.2.2
24 Apr 2022 19:42:19
|
Yuri Victorovich (yuri) |
science/py-nibabel: Update 3.2.1 -> 3.2.2
Reported by: portscout |
3.2.1
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
3.2.1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
3.2.1
21 Jan 2021 02:07:07
 |
yuri |
New port: science/py-nibabel: Read/write some common neuroimaging file formats |
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