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Port details
py-nibabel Read/write some common neuroimaging file formats
5.3.2 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.3.2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-21 02:07:56
Last Update: 2024-11-17 18:10:31
Commit Hash: 6b15c10
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: python
License: MIT
WWW:
https://nipy.org/nibabel/
Description:
This package provides read +/- write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, MGH and ECAT as well as Philips PAR/REC. We can read and write FreeSurfer geometry, annotation and morphometry files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-nibabel/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-nibabel
  • pkg install py311-nibabel
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-nibabel listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py311-nibabel
Package flavors (<flavor>: <package>)
  • py311: py311-nibabel
distinfo:
TIMESTAMP = 1731827547 SHA256 (nibabel-5.3.2.tar.gz) = 0bdca6503b1c784b446c745a4542367de7756cfba0d72143b91f9ffb78be569b SIZE (nibabel-5.3.2.tar.gz) = 4504842
Packages (timestamps in pop-ups are UTC):
py39-nibabel
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------5.2.0_1-
FreeBSD:14:latest--------
FreeBSD:14:quarterly------5.2.0_1-
FreeBSD:15:latest--n/a-n/a-5.2.0_15.2.0_1
 

py311-nibabel
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest5.3.25.3.2-5.3.25.3.2---
FreeBSD:13:quarterly5.3.25.3.2-5.3.25.3.2---
FreeBSD:14:latest5.3.25.3.2-5.3.25.3.2---
FreeBSD:14:quarterly5.3.25.3.2-5.3.25.3.2---
FreeBSD:15:latest5.3.25.3.2n/a5.3.2n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py311-hatch-vcs>0 : devel/py-hatch-vcs@py311
  2. py311-hatchling>0 : devel/py-hatchling@py311
  3. python3.11 : lang/python311
  4. py311-build>=0 : devel/py-build@py311
  5. py311-installer>=0 : devel/py-installer@py311
Test dependencies:
  1. py311-pytest-cov>0 : devel/py-pytest-cov@py311
  2. py311-pytest-doctestplus>0 : devel/py-pytest-doctestplus@py311
  3. py311-pytest-httpserver>0 : devel/py-pytest-httpserver@py311
  4. py311-pytest-xdist>0 : devel/py-pytest-xdist@py311
  5. py311-pydicom>0 : science/py-pydicom@py311
  6. py311-pytest>=7,1 : devel/py-pytest@py311
  7. python3.11 : lang/python311
Runtime dependencies:
  1. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  2. py311-packaging>=17 : devel/py-packaging@py311
  3. python3.11 : lang/python311
  4. py311-importlib-resources>=1.1.0 : devel/py-importlib-resources@py311
  5. py311-typing-extensions>=4.6 : devel/py-typing-extensions@py311
This port is required by:
for Build
  1. science/py-trx-python
for Run
  1. science/py-dipy

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/py-nilearn*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options:
No options to configure
Options name:
science_py-nibabel
USES:
python:3.9+
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/n/nibabel/
  2. https://pypi.org/packages/source/n/nibabel/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.3.2
17 Nov 2024 18:10:31
commit hash: 6b15c10d2a2610f3a70256fea2d9a5c74a1e165fcommit hash: 6b15c10d2a2610f3a70256fea2d9a5c74a1e165fcommit hash: 6b15c10d2a2610f3a70256fea2d9a5c74a1e165fcommit hash: 6b15c10d2a2610f3a70256fea2d9a5c74a1e165f files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: update 5.3.0 → 5.3.2
5.3.0
10 Oct 2024 01:34:05
commit hash: 23feee0e0d8cd8554ff03abf80744c6c61a8a1a5commit hash: 23feee0e0d8cd8554ff03abf80744c6c61a8a1a5commit hash: 23feee0e0d8cd8554ff03abf80744c6c61a8a1a5commit hash: 23feee0e0d8cd8554ff03abf80744c6c61a8a1a5 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: update 5.2.1 → 5.3.0

Reported by:	portscout
5.2.1
14 Apr 2024 19:07:37
commit hash: 4b2250f1aaf414e63fe23b2f1396500ac7a17846commit hash: 4b2250f1aaf414e63fe23b2f1396500ac7a17846commit hash: 4b2250f1aaf414e63fe23b2f1396500ac7a17846commit hash: 4b2250f1aaf414e63fe23b2f1396500ac7a17846 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: update 5.2.0 → 5.2.1

Reported by:	portscout
5.2.0_1
12 Dec 2023 21:14:13
commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297commit hash: 5e276b8b14bdcb637637955eab78baf76e435297 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: Fix the failing test
5.2.0
12 Dec 2023 21:14:13
commit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0ccommit hash: 4937de20102462bc1f4611e6ecf6dc0dc9ba0e0c files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: update 5.1.0 → 5.2.0

Reported by:	portscout
5.1.0
27 Jun 2023 07:46:41
commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963commit hash: bd54736f9bacb3eef4033ecddad28a0089168963 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: Add comment
5.1.0
27 Jun 2023 04:41:40
commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48commit hash: 320db292d72f1efd1ad30437fe3cc04143d1cb48 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: Update 3.2.2 → 5.1.0

Reported by:	portscout
3.2.2_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit		 Gerald Pfeifer (gerald) search for other commits by this committer 
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
3.2.2
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit		 Dmitry Marakasov (amdmi3) search for other commits by this committer 
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.2.2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.2.2
24 Apr 2022 19:42:19
commit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24fcommit hash: d16f0bcf64ed12887454d593f434bec4dacca24f files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/py-nibabel: Update 3.2.1 -> 3.2.2

Reported by:	portscout
3.2.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
3.2.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
3.2.1
21 Jan 2021 02:07:07
Revision:562166Original commit files touched by this commit		 yuri search for other commits by this committer 
New port: science/py-nibabel: Read/write some common neuroimaging file formats

Number of commits found: 15
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