Port details
py-psims Writers and controlled vocabulary manager for PSI-MS's mzML and mzIdentML standards
1.4.0 science Σ 1.4.0Version of this port present on the latest quarterly branch. Maintainer: sunpoet@FreeBSD.org Port Added: 2026-09-29 19:31:10Last Update: 2026-09-29 19:17:28Commit Hash: 301164a Also Listed In: python License: APACHE20WWW: https://mobiusklein.github.io/psims/docs/build/html/ https://github.com/mobiusklein/psims Description: # Prototype work for a unified API for writing Proteomics Standards Initiative
standardized formats for mass spectrometry:
1. mzML
2. mzIdentML
3. mzMLb Manual pages: # FreshPorts has no man page information for this port.
pkg-plist: make generate-plist # There is no configure plist information for this port. USE_RC_SUBR (Service Scripts)
no SUBR information found for this port
Dependency lines :
${PYTHON_PKGNAMEPREFIX}psims>0:science/py-psims@${PY_FLAVOR} To install the port : # cd /usr/ports/science/py-psims/ && make install clean To add the package , run one of these commands: pkg install science/py-psims pkg install py312-psims py312-psims listed in the above command, you can pick from the names under the Packages section.PKGNAME: py312-psims Package flavors (<flavor>: <package> ) # distinfo: # TIMESTAMP = 1790435632
SHA256 (psims-1.4.0.tar.gz) = ac7730c507864eb141877a700dd79e5fc7afc7da30998778b91c50e0f9f5e8e7
SIZE (psims-1.4.0.tar.gz) = 23888972
Packages (timestamps in pop-ups are UTC): #
Dependencies # NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered. Build dependencies: #
py312-setuptools>=0 : devel/py-setuptools@py312 py312-wheel>=0 : devel/py-wheel@py312 python3.12 : lang/python312 py312-build>=0 : devel/py-build@py312 py312-installer>=0 : devel/py-installer@py312
Test dependencies: #
python3.12 : lang/python312
Runtime dependencies: #
py312-lxml>=0 : devel/py-lxml@py312 py312-numpy>=0,1 : math/py-numpy@py312 py312-six>=0 : devel/py-six@py312 py312-sqlalchemy20>=0 : databases/py-sqlalchemy20@py312 python3.12 : lang/python312
This port is required by: # for Run #
science/py-pyteomics Configuration Options : # No options to configure Options name : # science_py-psims USES: # python
pkg-message: # FreshPorts was unable to extract/find any pkg message Master Sites: #
Number of commits found: 1 #
Commit History - (may be incomplete: for full details, see links to repositories near top of page) Commit Credits Log message 1.4.0 Po-Chuan Hsieh (sunpoet) science/py-psims: Add py-psims 1.4.0
Prototype work for a unified API for writing Proteomics Standards Initiative
standardized formats for mass spectrometry:
1. mzML
2. mzIdentML
3. mzMLb
Number of commits found: 1
