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Port details
py-trx-python Experiments with new file format for tractography
0.3 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.2.9Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-12-17 19:40:40
Last Update: 2024-11-09 02:50:28
Commit Hash: 8540aca
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://tee-ar-ex.github.io/trx-python/
Description:
trx is a Python implementation of the trx file-format for tractography data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}trx-python>0:science/py-trx-python@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-trx-python/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-trx-python
  • pkg install py311-trx-python
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-trx-python listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py311-trx-python
Package flavors (<flavor>: <package>)
  • py311: py311-trx-python
distinfo:
TIMESTAMP = 1731105961 SHA256 (trx_python-0.3.tar.gz) = 193e3282eaf03610c7e1b848aec04ddb9498fad3a7b684b30ca358e06751fbfd SIZE (trx_python-0.3.tar.gz) = 85937

Packages (timestamps in pop-ups are UTC):
py39-trx-python
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------0.2.9-
FreeBSD:14:latest--------
FreeBSD:14:quarterly------0.2.9-
FreeBSD:15:latest--n/a-n/a-0.2.90.2.9
 

py311-trx-python
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-0.3------
FreeBSD:13:quarterly-0.3------
FreeBSD:14:latest-0.3------
FreeBSD:14:quarterly-0.3------
FreeBSD:15:latest-0.3n/a-n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py311-deepdiff>0 : devel/py-deepdiff@py311
  2. py311-nibabel>0 : science/py-nibabel@py311
  3. py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
  4. py311-packaging>=19.0 : devel/py-packaging@py311
  5. py311-setuptools-scm>=3.4 : devel/py-setuptools-scm@py311
  6. py311-setuptools_scm_git_archive>0 : devel/py-setuptools_scm_git_archive@py311
  7. py311-wheel>0 : devel/py-wheel@py311
  8. py311-setuptools>0 : devel/py-setuptools@py311
  9. cython-3.11 : lang/cython@py311
  10. python3.11 : lang/python311
  11. py311-build>=0 : devel/py-build@py311
  12. py311-installer>=0 : devel/py-installer@py311
Test dependencies:
  1. py311-flake8>=0 : devel/py-flake8@py311
  2. py311-psutil>0 : sysutils/py-psutil@py311
  3. py311-pytest-console-scripts>0 : devel/py-pytest-console-scripts@py311
  4. py311-pytest>=7,1 : devel/py-pytest@py311
  5. python3.11 : lang/python311
Runtime dependencies:
  1. py311-setuptools-scm>0 : devel/py-setuptools-scm@py311
  2. python3.11 : lang/python311
This port is required by:
for Run
  1. science/py-dipy

Configuration Options:
No options to configure
Options name:
science_py-trx-python
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/t/trx_python/
  2. https://pypi.org/packages/source/t/trx_python/
Collapse this list.

Number of commits found: 4

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.3
09 Nov 2024 02:50:28
commit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6cacommit hash: 8540aca3ace7e962b115a3b66f5ef0af7bfac6ca files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-trx-python: update 0.2.9 → 0.3
0.2.9
24 Jun 2024 22:17:01
commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08commit hash: 14a73ac2f1ba7b3926015479cf6cb833cedf0a08 files touched by this commit
Wen Heping (wen) search for other commits by this committer
science/py-trx-python: Fix build with removing setuptools from RUN_D

PR:		270510
Approved by:	portmgr(blanket, fix build)
0.2.9
29 Feb 2024 07:18:32
commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
devel/py-setuptools-scm: update to 8.0.4

Directory and PORTNAME changed to match normalised name in release
tarball; consumers updated to match.

Although setuptools itself is specified as a run dependency in the
Python package metadata, it is currently left out here to prevent
environment pollution until at least PR 270510 is committed.
Additionally, this version of setuptools-scm requires setuptools>=61,
which means this version is only meant for USE_PYTHON=pep517 ports
as all USE_PYTHON=distutils ports will switch to devel/py-setuptools58
also after PR 270510. science/py-emmet-core is switched to
devel/py-setuptools_scm7 accordingly, as it specifies setuptools-scm<8.
devel/py-{flit-scm,hatch-vcs} have ${PY_SETUPTOOLS} added to
RUN_DEPENDS to compensate.

Further details: https://wiki.freebsd.org/Python/setuptools

Reported by: yuri
Co-authored by: matthew
Exp-run by: antoine (earlier iteration)
Approved by: yuri (science/py-emmet-core, previous iteration)
PR: 272134
Differential Revision: https://reviews.freebsd.org/D39288
0.2.9
17 Dec 2023 19:01:48
commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5commit hash: f47c4702d35c68b06f643f35c9cb97aa064e4bb5 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-trx-python: New port: Experiments with new file format for
tractography

Number of commits found: 4