| Port details |
- pyteomics Python modules for proteomics data analysis
- 2.4.0_1 science
 =0      2.4.0_1Version of this port present on the latest quarterly branch. - Maintainer: makc@FreeBSD.org
- Port Added: 2013-03-28 13:05:57
- Last Update: 2015-11-02 09:24:50
- SVN Revision: 400643
- Also Listed In: python
- License: not specified in port
- WWW:
- https://pypi.python.org/pypi/pyteomics
- Description:
- Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data. Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
* calculation of basic physico-chemical properties of polypeptides:
. mass and isotopic distribution
. charge and pI
. chromatographic retention time
* access to common proteomics data:
. MS or LC-MS data
. FASTA databases
. search engines output
* easy manipulation of sequences of modified peptides and proteins
WWW: https://pypi.python.org/pypi/pyteomics
 cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}pyteomics>0:science/pyteomics@${PY_FLAVOR}
- No installation instructions:
- This port has been deleted.
- PKGNAME: py27-pyteomics
- Flavors: there is no flavor information for this port.
- distinfo:
- There is no distinfo for this port.
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py27-setuptools27>0 : devel/py-setuptools27
- python2.7 : lang/python27
- Runtime dependencies:
-
- py27-lxml>=0 : devel/py-lxml
- py27-matplotlib>=0 : math/py-matplotlib
- numeric.py : math/py-numpy
- py27-setuptools27>0 : devel/py-setuptools27
- python2.7 : lang/python27
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- N/A
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2.4.0_1
02 Nov 2015 09:24:50
  |
makc |
Rename my ports to comply with Python ports policy
Requested by: koobs |
2.4.0_1
24 Oct 2014 16:50:43
|
mva |
- Convert ports of science/ and security to new USES=python
Approved by: portmgr (implicit) |
2.4.0_1
10 Sep 2014 20:50:37
|
gerald |
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit) |
2.4.0
03 Apr 2014 10:10:18
|
makc |
science/pyteomics:
- update to 2.4.0 |
2.3.0
31 Mar 2014 10:55:38
|
makc |
science/pyteomics:
- update to 2.3.0 |
2.2.1_1
10 Mar 2014 20:55:22
|
gerald |
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs) |
2.2.1
29 Nov 2013 11:57:18
|
makc |
Update to 2.2.1 |
2.2.0
18 Nov 2013 14:57:06
|
makc |
- Update to 2.2.0
- Use autoplist |
2.1.5_1
26 Oct 2013 00:52:36
|
gerald |
Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
- #14669: Fixed extraction of CC from gmp.h.
- Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
- Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
- 100% of all lines are covered by tests
- Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui (Only the first 15 lines of the commit message are shown above  ) |
2.1.5
23 Oct 2013 13:08:42
|
makc |
- Support staging
- Use new LIB_DEPENDS syntax
- Use options helpers
- Convert to USES
- Minor changes/fixes |
2.1.5
20 Sep 2013 22:48:31
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
science) |
2.1.5
11 May 2013 07:42:20
|
makc |
- Update to 2.1.5 and [1]:
- Allow to build with python3
- Simplify MASTER_SITES
- Don't remove python shared directories
Prompted by: rm [1] |
2.1.3
28 Mar 2013 13:05:42
|
makc |
Add new port science/pyteomics:
Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data. Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
* calculation of basic physico-chemical properties of polypeptides:
. mass and isotopic distribution
. charge and pI
. chromatographic retention time
* access to common proteomics data:
. MS or LC-MS data
. FASTA databases
. search engines output
* easy manipulation of sequences of modified peptides and proteins
WWW: https://pypi.python.org/pypi/pyteomics |
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