sysutils/slurm-wlm: Back to the pool

*/*: Bump consumers of databases/rrdtool

New version of rrdtool in tree

devel/onetbb: Update to 2021.13.0

and bump dependent ports' revisions.

Release
notes:	https://github.com/oneapi-src/oneTBB/blob/v2021.13.0/RELEASE_NOTES.md

sysutils/slurm-wlm: Update to 23.11.7

ChangeLog: https://www.schedmd.com/slurm-version-23-11-7-is-now-available/

MFH:		2024Q2 (bugfixes)

sysutils/slurm-wlm: add correct linker emulation for aarch64

Approved by:	portmgr (blanket)
MFH:		2024Q2

sysutils/slurm-wlm: Update to 23.11.6

- Take maintainership

ChangeLog:
	https://www.schedmd.com/slurm-version-23-11-5-is-now-available-2/
	https://www.schedmd.com/slurm-version-23-11-5-is-now-available/
	https://www.schedmd.com/slurm-version-23-11-4-is-now-available/
	https://www.schedmd.com/slurm-version-23-11-3-is-now-available/
	https://www.schedmd.com/slurm-version-23-11-2-is-now-available/

MFH:		2024Q2 (bugfixes)

sysutils/slurm-wlm: fix build on powerpc64*

While here, also enable ofed libraries which don't seem to be experimental
anymore.

devel/onetbb: Update to 2021.12.0

and bump dependent ports' revisions.

Release notes: https://github.com/oneapi-src/oneTBB/releases/tag/v2021.12.0

sysutils/slurm-wlm: Moved man to share/man

Approved by:    portmgr (blanket)

sysutils/slurm-wlm: fix plist without HDF5

Reported by:	leres@

sysutils/slurm-wlm: upgrade to 23.11.1

Releases notes at <https://www.schedmd.com/news.php>.

Remark: MySQL is no more an option.

Security:	CVE-2023-49933 through CVE-2023-49938
Differential Revision:	<https://reviews.freebsd.org/D42764>

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

sysutils/slurm-wlm: Unbreak build: add perl5 to the build environment

It's not clear to me how this ever built given all the places in
configure that use the "perl" command. But it was building (for me
at least) as recently as yesterday. I can only assume something
changed in the ports build infrastructure.

Anyway, this lets me build kicad again.

sysutils/slurm-wlm: Unbreak FETCH

Upstream no longer hosts our old version in tree so switch to another
host.

PR:		267088

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

sysutils/slurm-wlm: fix build on -CURRENT

The CPU_OR macro has been made compatible with GLIBC on -CURRENT,
the FreeBSD specific alternative is therefore no longer required.

While here pass --disable-slurmrestd to prevent the auto-configure
script from attempting to build slurmrestd if glib is found by
auto-configure (it does not build on FreeBSD due to Linux specific
headers and shell features provided by Bash but by the /bin/sh in
FreeBSD).

This port has numerous build issues when not building in a clean
jail (i.e. on a system with a previous version installed or with
other software that is detected by auto-configure).

The port revision is not bumped since these changes do not modify
the package that is generated.

sysutils/slurm-wlm: Release to ports@

Newer versions of SLURM contain unconditional dependencies on cgroups.
This is a major addition to other long-standing linuxisms such as
parsing /proc files to enforce resource limits (this should be done
using sysctls on FreeBSD).

Currently, it would *not* be extraordinarily difficult to make SLURM
mostly functional on FreeBSD, but it has also become increasingly
complex and unsuitable for small-scale HPC.  Given the current
direction and the apparent priorities of SchedMD, I believe it will
only become more difficult to maintain non-Linux ports over time.

Rather than fight the current, I have begun development of a new batch
system with a commitment to simplicity and portability:

https://github.com/outpaddling/lpjs

sysutils/slurm-wlm: Add CPE information

Approved by:	portmgr (blanket)

*: Clean up some things

- Fix typos
- Remove nop or unreferenced variables
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan

sysutils/slurm-wlm: Update to 20.02.7

Add latest patch set (too numerous to cover, see RELEASE_NOTES in the dist)
Remove upstreamed patches

*: Remove unnecessary 'port' argument from USES=readline

PR:		248459
Exp-run by:	antoine

Clean up some things

- Fix typos
- Remove duplicate variables
- Remove nop variables
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

sysutils/slurm-wlm: More precise hdf5 dependency

Change LIB_DEPEND to libhdf5_cpp.so, since slurm depends on h5cc, which
is conditionally installed when C++ support is enabled.  This is a slight
improvement for users building slurm from source when hdf5 C++ support is
missing.

PR:             253599
Reported by:    Patrick McMunn

sysutils/slurm-wlm: Patch to work with hdf5 1.12

PR:             252567
Submitted by:   thierry

sysutils/slurm-wlm: Switch from hwloc to hwloc2

Also minor improvements to example slurm.conf

PR:             252495
Reported by:    thierry

sysutils/slurm-wlm: Back out -fno-common patches, add -fcommon flag

Fixes runtime regression caused by r546150

Reported by:    jrm
MFH:            2020Q4

sysutils/slurm-wlm: Patch in lua 5.4 support

PR opened upstream
Make sure patch files have meaningful names

PR:             251471
Reported by:    greg@unrelenting.technology

Make exclusion of other 32-bit archs explicit.

Approved by:	portmgr (tier-2 blanket)

sysutils/slurm-wlm: Fix build with -fno-common

Add two patches based on upstream changes to fix the build of
sysutils/slurm-wlm with -fno-common, which is the default with llvm 11.

MFH:		2020Q3 (implicit, -fno-common fixes, ok by joenum)

Bump PORTREVISION for devel/json-c json-c

sysutils/slurm-wlm: Revert error file to stderr when redirect no longer needed

Fixes an oversight in a new patch for 20.02.1

sysutils/slurm-wlm: Upgrade to 20.02.1

Numerous bug fixes and enhancements

Reported by:    portscout

sysutils/slurm-wlm: Remove obsolete and broken REINPLACE

SLURM since 18.08 defaults to /usr/bin/mail if /bin/mail doesn't exist so
this patch is no longer needed and was not functioning correctly anyway

Reported by:    swills

sysutils/slurm-wlm: Patch build system for clang/lld 10

PR:             ports/244508
Submitted by:   dim

sysutils/slurm-wlm: Upgrade to 19.05.5

Fix recent CVEs
Clean up config file example patches

Reported by:    pkgsrc-security

sysutils/slurm-wlm: Drop nop MYSQL_CONFIGURE_with

It was probably meant to be MYSQL_CONFIGURE_WITH, but the configure
script does not support --with-mysql or --without-mysql.

sysutils/slurm-wlm: Temporary patch to silence job accounting errors

Disables linux-specific code when using jobacct_gather/linux for now.
Long-term solution is to revamp job accounting code for FreeBSD.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

sysutils/slurm-wlm: Upgrade to 19.05.1-2

Resolves CVE-2019-12838
Add NOT_FOR_ARCHS since upstream has deprecated 32-bit architectures

sysutils/slurm-wlm: Revert previous change enabling Linux option by default

Option is not actually necessary anymore to enable linproc parsing code.
It merely adds a linux_base dependency now.

sysutils/slurm-wlm: Enable jobacct_gather/linux by default

Currently required to terminate jobs exceeding their memory allocation
(until jobacct_gather/freebsd is implemented)

sysutils/slurm-wlm: Remove redundant USE_GCC

Reported by:    tobik

sysutils/slurm-wlm: Upgrade to 18.08.7

Improve default settings for FreeBSD

Reviewed by:    jrm

Update devel/readline to 8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

sysutils/slurm-wlm: Change WWW to https

Approved by:	portmgr blanket

Update devel/json-c to 0.13.1

- Add my LOCAL to MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/json-c/json-c/blob/master/ChangeLog
PR:		231007
Exp-run by:	antoine

sysutils/slurm-wlm: Update to version 17.02.11

This update fixes CVE-2018-10995.

sysutils/slurm-wlm: Update to version 17.02.10

Upstream changes: https://github.com/SchedMD/slurm/blob/master/NEWS#L787

Security:	https://vuxml.freebsd.org/freebsd/b3e04661-2a0a-11e8-9e63-3085a9a47796.html

sysutils/slurm-wlm: Fix WITHOUT_KERBEROS build and configure issue

- Fix build when WITHOUT_KERBEROS is used by patching files to remove
  '#include <roken.h>'. [1]
- Fix configure when PREFIX is set to something other than /usr/local. The
  check for man2html is hard-coded to search /usr/bin and
  /usr/local/bin. [2]

PR:		225989
Submitted by:	tijl [1] jwb [2]

Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128

Update devel/json-c to 0.13

- Add TEST_TARGET
- While I'm here, fix shebang for net/opensips
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/json-c/json-c/blob/master/ChangeLog
PR:		224675
Exp-run by:	antoine

sysutils/slurm-wlm: Update to version 17.02.9

Upstream changes: https://github.com/SchedMD/slurm/blob/master/NEWS

sysutils/slurm-wlm: Update to version 17.02.8.  Also, only replace
instances of /proc with /compat/linux/proc when the LINUX option is on.

sysutils/slurm-wlm: fix typo in option description

Reported by:	bacon4000@gmail.com

sysutils/slurm-wlm: Update to version 17.02.7

Also silence portlint warning about order of USES/USE_*.

Upstream changes: https://github.com/SchedMD/slurm/blob/slurm-17.02/NEWS

sysutils/slurm-wlm: Update to version 17.02.6

Upstream changes: https://github.com/SchedMD/slurm/blob/slurm-17.02/NEWS

sysutils/slurm-wlm: Update to version 17.02.5

Upstream changes: https://github.com/SchedMD/slurm/blob/slurm-17.02/NEWS

Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

sysutils/slurm-wlm: Add support for the jobacct_gather/linux plugin

- The plugin requires linprocfs, so add an off-by-defult option knob to
  depend on linux.
- Patch source files to point to /compat/linux/proc.

Submitted by:	Jason Bacon <bacon4000@gmail.com>
Approved by:	swills (mentor, implicit)

sysutils/slurm-wlm: Fix task affinity, mysql and gtk2 options, update
default slurm.conf, silence QA warning about liblz4, patch to make
/usr/bin/mail the default.

- Fix task affinity.  The reinplace for cpuset_setaffinity should not have
  been removed as it was not one of the patches incorporated upstream.

- The MYSQL and GTK2 options were not functioning properly when off.  If
  mysql and gtk2 were installed during configure phase, slurm would build
  sview and mysql support whether or not the options were selected.
  Poudriere will not catch this sort of problem.  I tested by installing
  with all options enabled so that all possible dependencies would be
  installed, and then rebuilding with all options off.  No QA warnings in
  either case now.

sysutils/slurm-wlm: Update to version 16.06.09.

Upstream Changes: https://github.com/SchedMD/slurm/blob/slurm-16.05/NEWS

Approved by:	swills (mentor, implicit)

Fix packaging

sysutils/slurm-wlm: Update to version 16.05.8.

Upstream changes in version 16.05.8:

  - Remove StoragePass from being printed out in the slurmdbd log at debug2
    level.
  - Defer PATH search for task program until launch in slurmstepd.
  - Modify regression test1.89 to avoid leaving vestigial job. Also reduce
    logging to reduce likelihood of Expect buffer overflow.
  - Do not PATH search for mult-prog launches if LaunchParamters=test_exec
    is enabled.
  - Fix for possible infinite loop in select/cons_res plugin when trying to
    satisfy a job's ntasks_per_core or socket specification.
  - If job is held for bad constraints make it so once updated the job
    doesn't go into JobAdminHeld.

sysutils/slurm-wlm: Update to version 16.05.7

- Remove patch that has been incorporated upstream.

No release notes are to be found.

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8834

sysutils/slurm-wlm: update to version 16.05.06

Changes in Slurm 16.05.6:
https://github.com/SchedMD/slurm/blob/master/NEWS

Port changes: Added a patch to fix a build issue. The patch was also
accepted upstream and should appear in the next Slurm release.

Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8411

Update sysutils/slurm-wlm to bug-fix-release 16.05.5

  - Add readline to USES (bin/sacctmgr now links to libreadline and
    libhistory)
  - Remove Cray node features patch now that it has been incorporated
    upstream
  - Update pkg-plist

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8095

Update email address to jrm@FreeBSD.org for ports that I maintain

Reviewed by:	mat, swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D7995

sysutils/slurm-wlm: 15.06.12 -> 16.05.4 and fix build hangs

PR:		210648
Changes:	https://github.com/SchedMD/slurm/blob/master/NEWS
Reported by:	w.schwarzenfeld@utanet.at
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)

- Update to 15.08.12
- Fix dependencies

PR:		209996
Submitted by:	jrm@ftfl.ca (maintainer)

sysutils/slurm-wlm: fix doc/plist issue

PR:		209587
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)

sysutils/slurm-wlm: improve build on hosts with other ports installed

Slurm will try to install different components based on various
installed libraries. This patch fixes issues where some files are
unexpectedly installed.

PR:		209511
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)

sysutils/slurm-wlm: 15.08.10 -> 15.08.11

- bug-fixes only

PR:		209336
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)

Update databases/rrdtool to 1.6.0

Most notably, this version of rrdtools.so is thread safe, so the
rrdtools_th.so library is removed.

Bump portrevision for depending ports due to shlib version bump.

For full changelog: http://oss.oetiker.ch/rrdtool/pub/CHANGES

Reviewed by:	kwm
Differential Revision:	D6168

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

sysutils/slurm-wlm: update 15.08.9 -> 15.08.10

PR:		208638
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)

- Update to 15.08.9
- While here, fix license

PR:		208449
Submitted by:	jrm@ftfl.ca (maintainer)

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

sysutils/slurm-wlm: Update to 15.08.8

Changelog:	https://github.com/SchedMD/slurm/blob/921064fefd9cb3ea3e997e0f79a3c016c8d30c7c/RELEASE_NOTES

PR:		207967

- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493

- Update to 14.11.9
- While here, add LICENSE_FILE

PR:		203529
Submitted by:	jrm@ftfl.ca (maintainer)

- Switch to options helpers
- Fix installation command
- No need to remove docsdir, it is handled in plist

Approved by:	portmgr blanket

Rename sysutils/slurm-hpc -> sysutils/slurm-wlm
Update to 14.11.8

Upstream is standardizing on "slurm-wlm", so we are renaming the port
accordingly.

PR:		200381
Approved by:	maintainer