math/R: Update to 4.4.3

Release
announcement:	https://hypatia.math.ethz.ch/pipermail/r-announce/2025/000708.html
Sponsored by:	The FreeBSD Foundation

*/*: Bump consumers of devel/icu

...to avoid library mismatches

math/R: drop unnecessary powerpc knob

math/R: Update to 4.4.2

Release announcement:
https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000704.html
Sponsored by:	The FreeBSD Foundation

math/R: Update to 4.4.1

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000704.html
Sponsored by:	The FreeBSD Foundation

math/R: Update to 4.4.0

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000701.html
Sponsored by:	The FreeBSD Foundation

graphics/tiff: Update to 4.6.0

PR:		278577
Exp-run by:	antoine

math/R: Update to 4.3.3

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000699.html
Sponsored by:	The FreeBSD Foundation

math/R: Moved man to share/man

Approved by:    portmgr (blanket)

math/R: fix build on powerpc

ld: error: ../nmath/bessel_y.o:(function Y_bessel: .text+0x822): relocation
R_PPC_GOT16 out of range: 32768 is not in [-32768, 32767]; references .LCPI1_53
>>> referenced by bessel_y.c
>>> defined in ../nmath/bessel_y.o

ld: error: ../nmath/bessel_y.o:(function Y_bessel: .text+0x83a): relocation
R_PPC_GOT16 out of range: 32776 is not in [-32768, 32767]; references .LCPI1_55
>>> referenced by bessel_y.c
>>> defined in ../nmath/bessel_y.o

ld: error: ../nmath/bessel_y.o:(function Y_bessel: .text+0x852): relocation
R_PPC_GOT16 out of range: 32784 is not in [-32768, 32767]; references .LCPI1_57
>>> referenced by bessel_y.c
>>> defined in ../nmath/bessel_y.o

ld: error: ../nmath/bessel_y.o:(function Y_bessel: .text+0x862): relocation
R_PPC_GOT16 out of range: 32792 is not in [-32768, 32767]; references .LCPI1_59

devel/icu: update to 74.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-74-1
Reported by:	GitHub (watch releases)
PR:		274317
Exp-run by:	antoine (incomplete)
Approved by:	fluffy

math/R: Update to 4.3.2

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000697.html
Sponsored by:	The FreeBSD Foundation

*/*: Bump PORTREVISION for Ghostscript 10 change

Reported by:	sunpoet
Approved by:	jrm (mentor), sunpoet
Differential Revision:	https://reviews.freebsd.org/D42412

*/*: Bump jpeg-turbo users treewide

New major version 3.0.0

math/R: Update to 4.3.1

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000694.html
Sponsored by:	The FreeBSD Foundation

math/R: Update to 4.3.0

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000691.html
Sponsored by:	The FreeBSD Foundation

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

devel/icu: update to 73.1

- Temporarily switch to GitHub auto archive (release artifacts are N/A atm)

Changes:	https://github.com/unicode-org/icu/releases/tag/release-73-1
Reported by:	GitHub (watch releases)
PR:		270422
Exp-run by:	antoine

math/R: Allow build with curl 8.0.0+

Approved by:	portmgr (blanket)

math/R: Update to 4.2.3

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000689.html
Sponsored by:	The FreeBSD Foundation

Mk/**tex.mk: Convert bsd.tex.mk to USES=tex

- Update all the consumers to use USES=tex
- USE_TEX=yes is the old way of writing USES=tex which has been removed
  and replaced in all ports
- Almost all of the USE_TEX features remains unchanged
- Some consumers had the same variables defined both in the mk
  infrastructure and also in the ports which have been removed from the
  ports as those are redundant.

In case any of the consumers are failing to build please make sure that
the nexessary USES=tex is there. Unlike previous USE_TEX=yes will no
longer load the required VARS for tex and related dependencies.

Reviewed by:	portmgr
Approved by:	portmgr (blanket)

math/R: Update to 4.2.2; remove FLANG option

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000686.html

Remove the FLANG option since lang/flang was removed from the tree on
2022-09-30.  In the future, the option can be re-added to use flang that
is part of devel/llvm13+.

Sponsored by:	The FreeBSD Foundation

devel/icu: update to 72.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-72-1
Reported by:	GitHub (watch releases)
PR:		266582
Exp-run by:	antoine

math/R: Update path set in RUN_DEPENDS for CMake

Commit b23ea4e2d2f51b53d8915fe9fd7b4efbdd575e38 changed its location to
devel/cmake-core

Approved by:	portmgr (blanket)

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/R: Update to 4.2.1

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000685.html

math/R: Update to 4.20

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000683.html

Sponsored by:	The FreeBSD Foundation

devel/icu: update to 71.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-71-1
Reported by:	GitHub (watch releases)
PR:		262654
Exp-run by:	antoine
Approved by:	fluffy

math/R: Update to 4.1.3

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000680.html

Sponsored by:	The FreeBSD Foundation

math/R: Add cmake dependency

Some R packages such as nloptr require CMake to build.

PR:		261835

Approved by:	jrm (maintainer)

math/R: Specify tk_config location during configure

PR:		261779

math/R: Update to 4.1.2

https://stat.ethz.ch/pipermail/r-announce/2021/000677.html

devel/icu: update to 70.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-70-1
Reported by:	GitHub (watch releases)
PR:		258794
Exp-run by:	antoine

math/R: Fix fetching of mgcv after distfile location changed

PR:		259108
Reported by:	thierry

math/R: Fix build with clang/openmp 13

The mgcv package is one of the recommended packages to be installed with
R.  A problem with mgcv and clang/openmp 13 is that mgcv versions prior
to 1.8-37 place 'include <omp.h>' after 'include <R.h>'.  This causes a
conflict between '#define match' and an openmp pragma line, which uses
match().  This problem was fixed in mgcv 1.8-37, so replace mgcv 1.8-36
with this newer version.

While here, incorporate formatting changes suggested by portclippy and
portfmt.

PR:		258887
Approved by:	dim
Differential Revision:	https://reviews.freebsd.org/D32280

math/R: Add CPE information

Approved by:    portmgr (blanket)

math/R: Bump PORTREVISION after ca96cfceb

math/R;math/libRmath: Update maintainers

I intended to drop maintainership of math/libRmath as I no longer use
it (and suspect there are few users), but accidentally dropped
maintainership of math/R.

math/R: Add missing harfbuzz dependency when CAIROPANGO is on

PR:		257795

math/R: Release maintainership

math/R: Update to 4.1.1

https://stat.ethz.ch/pipermail/r-announce/2021/000672.html

math/R: Add comment; minor formatting change from portfmt

math/R: enable on powerpc

math/R: Update to 4.1.0

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

*: Remove unnecessary 'port' argument from USES=readline

PR:		248459
Exp-run by:	antoine

devel/icu: update to 69.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-69-1
Reported by:	GitHub (watch releases)

math/R: Update to bug-fix release, 4.0.5

https://stat.ethz.ch/pipermail/r-announce/2020
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

math/R: Incorporate formatting suggestions from portclippy/portfmt

Remove # $FreeBSD$ from Makefiles.

math/R: enable OPENMP on powerpc64 and powerpc64le

math/R: remove obsolete fpsetmask

src/unix/sys-unix.c uses fpsetmask to workaround a bug that is not present since
FreeBSD 4.0.

This issue also affected Firefox and was resolved 9 years ago
https://bugzilla.mozilla.org/show_bug.cgi?id=789436#c27

fpsetmask executions cause R build to crash on powerpc64(le), since new SIGFPE
kernel code doesn't take into account old workarounds.

PR:		254621
Approved by:	jrm (maintainer)

Remove redundant option descriptions that match the default ones

(ignoring case)

Reported by:	danfe (for net/mosquitto), portscan

math/R: Update to version 4.0.4

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

devel/icu: update to 68.1

Changes:	http://site.icu-project.org/download/68
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
Reported by:	GitHub (watch releases)

math/R: Update to version 4.0.3

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000662.html

Allow building on powerpc64le.

Approved by:	portmgr (tier-2 blanket)

math/R: Update to version 4.0.2

Upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

math/R: Update to version 4.0.1

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000655.html

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

devel/icu: update to 67.1

Changes:	http://site.icu-project.org/download/67
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
Reported by:	GitHub (watch releases)

devel/icu: update to 66.1

Changes:	http://site.icu-project.org/download/66
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/

math/R: Update to version 3.6.3

See the NEWS file for upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

Add and use a shared INFO description. I have patches to add that knob to
a bunch of additional ports.

math/R: Update to version 3.6.2

See the NEWS file for upstream changes:
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

math/R: No-op to standardize formatting using ports-mgmt/portfmt

devel/icu: update to 65.1

Changes:	http://site.icu-project.org/download/65
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

math/R: Fix dependency condition for devel/openmp

libomp is provided by
  - LLVM, which gets pulled in with FLANG
  - gcc

So, we *must* only depend on devel/openmp when
  - the OPENMP knob is on
  - FLANG is off (guaranteed to be off for all archs except amd64)
  - clang is the C compiler.

But, we cannot modify LIB_DEPENDS after CHOSEN_COMPILER_TYPE is defined, so
for now, limit the OPENMP knob for i386 and amd64 where clang is the
default compiler.

This will be moot after 12.1 when openmp will be in base.

PR:		240279
Reported by:	pkubaj
Reviewed by:	pkubaj

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

math/R: Update to version 3.6.1

Upstream changes: See 'CHANGES IN R 3.6.1' and 'CHANGES IN R 3.6.1 patched'
at https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

math/R: force new compiler on GCC architectures

This is to fix build of textproc/R-cran-stringi.

Approved by:	mentors (implicite approval)

math/R: add powerpc64

Compiles fine on powerpc64.

Approved by:	mentors (implicite approval)

devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767

cran.mk: Don't include math/R/compiler.mk; it was removed in r500605

Pointy-hat:	jrm

math/R: Upgrade to version 3.6.0

Upstream changes: See 'CHANGES IN R 3.6.0' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Update devel/readline to 8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine

devel/icu: update to 64.1

Changes:	http://site.icu-project.org/download/64
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		236325
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19479

math/R: Update to version 3.5.3

'CHANGES IN R 3.5.3' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

- writeLines(readLines(fnam), fnam) now works as expected, thanks to Peter
  Meissner's PR#17528
- setClassUnion() no longer warns, but uses message() for now, when
  encountering "non local" subclasses of class members
- stopifnot(exprs = T) no longer fails

math/R: Update to version 3.5.2

This is mostly a bug-fix release.  For details see 'CHANGES IN R 3.5.2' in
the release notes.
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Install texinfo files (GNU info) into ${PREFIX}/share/info

After a discussion on the mailing list on moving manpages to
${PREFIX}/share/man for consistency with base where it is
installed in usr/share/man, it appeared the same should happen
to GNU info files which were installed under share in base and
not in ports.

Now texinfo is not in base on any of the supported version of FreeBSD
it is possible to proceed to this move and it is easier to do than
the manpage change.

Other benefit than consistency are less patching: all build tools but
cmake are expecting info files to be under share/info and cmake (patched here)
was having an exception for BSD so the patch makes FreeBSD case less
specific for them

Bump revision of all impacted ports

PR:		232907
exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17816

Remove compatibility code for FreeBSD < 11.2 from all ports.

Simplify some ports where DragonFlyBSD no longer needs to be special-cased.
Submitted by:	rene
Reviewed by:	bapt, jbeich
Differential Revision:	https://reviews.freebsd.org/D17724

devel/icu: update to 63.1

Changes:	http://site.icu-project.org/download/63
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		232300
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

math/R: Update to version 3.5.1

devel/icu: update to 62.1

Changes:	http://site.icu-project.org/download/62
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		229359
Exp-run by:	antoine (only 10.4)

math/R: Permit building in poudriere with ATLAS

When ATLAS is built locally and then injected into poudriere (or other
similar shenanigans) it does not make sense to block building of R.

Approved by:	jrm (maintainer)

math/R: Update to version 3.5.0

Upstream changes: https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

devel/icu: update to 61.1

Changes:	http://site.icu-project.org/download/61
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		227042
Exp-run by:	antoine
MFH:		2018Q2 (required by Firefox 61)

math/R: Update to bug-fix release 3.4.4

Upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

math/R: Turn on the TCLTK option by default

The TCLTK option was turned off in r455296, however this breaks
devel/R-cran-gsubfn.

PR:		224472
Submitted by:	w.schwarzenfeld@utanet.at

math/R: Rename files/extra-patch-src_main_Makefile.in to
files/patch-src_main_Makefile.in, so that the SONAME for libR is included.
This was intended for r455296.

math/R: Update to version 3.4.3

Other port changes:
- Add armv6 and armv7 to ONLY_FOR_ARCHS; armv6 and armv7 were tested by mmel@
  and working on 11.
- Remove LIBR option and always build the shared library.  This was requested by
  yuri@ and a RFC was posted on ports@ with no response.
- Exclude OPENMP option for everything except amd64 and i386.
- Turn on OPENMP option by default to match upstream.
- Turn off TCLTK option by default.
- LLVM, which gets pulled in with FLANG, provides libomp, so only depend on
  devel/openmp, when GFORTRAN and OPENMP are on.

Remove pkg-message about problems with gfortran.  The problem has been
addressed in r454161.

PR:		221127