devel/boost: bump consumers after Boost-1.87 update

Sponsored by:	Future Crew, LLC

*/*: bump PORTREVISION to chase blas/lapack, Suitesparse and BLIS

math/pari: update 2.15.5 → 2.17.1

devel/boost: bump consu,ers after update Boost to 1.86 release

Sponsored by:	Future Crew, LLC

*/*: bump consumers after devel/boost* update

With hat:	office
Sponsored by:	Future Crew, LLC

math/giacxcas: Broken on armv7 math/giacxcas

Reported by:	fallout

math/giacxcas: mark broken on powerpc

math/giacxcas: update 1.9.0-55 → 1.9.0-85

Reported by:	portscout

math/giacxcas: Broken on i386

Reported by:	fallout

*/*: chase the upgrade of BLAS / LAPACK to 3.12.0

PR:		275860

math/giacxcas: Update 1.9.0-21 → 1.9.0-55

*/*: Bump jpeg-turbo users treewide

New major version 3.0.0

math/nauty: Update 2.7r3 → 2.8.6

PR:		271718
Approved by:	moritz@schmi.tt (maintainer's timeout; 17 days)

audio/opus: bump consumers after update to 1.4

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

Mk/**tex.mk: Convert bsd.tex.mk to USES=tex

- Update all the consumers to use USES=tex
- USE_TEX=yes is the old way of writing USES=tex which has been removed
  and replaced in all ports
- Almost all of the USE_TEX features remains unchanged
- Some consumers had the same variables defined both in the mk
  infrastructure and also in the ports which have been removed from the
  ports as those are redundant.

In case any of the consumers are failing to build please make sure that
the nexessary USES=tex is there. Unlike previous USE_TEX=yes will no
longer load the required VARS for tex and related dependencies.

Reviewed by:	portmgr
Approved by:	portmgr (blanket)

math/pari: Update 2.13.4 -> 2.15.0

Reported by:	portscout

math/giacxcas: Update 1.6.0-7 -> 1.9.0-21

The newly introduced bundled dependency micropython-1.12 causes
SEGV and it was disabled.

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

INSTALLS_ICONS: retire the macro and rework the related dependencies

While here, make sure gtk-update-icon-cache is only on run dependency
where added as a dependency
Enforce gtk3 to depend on gtk-update-icon-cache (previously it was
inheriting the dependency)

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6

cleanup: remove LEGAL and (support in) related tools.

LEGAL is badly maintained, LEGALlint notices quite a number of ports
which mismatch their line in LEGAL. The port itself is always leading.

* math/giacxcas: restrict RESTRICTED_FILES to giac_* only

Differential Revision: https://reviews.freebsd.org/D30061

Reviewed by:	portmgr (mat), dch, eadler, marcus

Deorbit RESTRICTED && NO_CDROM, part one.

For ports that already use the licenses framwork, merge the content of
RESTRICTED/NO_CDROM/LEGAL* entries into LICENSEs.

Approved by:	rene
Differential Revision:	https://reviews.freebsd.org/D30010

Remove # $FreeBSD$ from Makefiles.

math/pari: Update 2.11.4 -> 2.13.0

Bump 15 depending ports.

Reported by:	portscout

math/giacxcas: Fix plist

math/giacxcas: Update 1.5.0-87 -> 1.6.0-7

Reported by:	portscout

math/giacxcas: Fix build on 13-CURRENT

giacxas expects mallinfo in malloc.h
On systems before 13 the detection of malloc.h fails, but on 13 it succeeds but
compilation then fails due to a missing mallinfo function.

Reported by:	thierry, fallout

math/giacxcas: fix build on GCC architectures

Use C++14 compiler:
ERROR: unable to find flag for C++14 compilation
ERROR: test compilation with flag -std=c++14 failed   [[cxx14.sh]]

- Fix an initial problem encountered with libgiac: it could not be linked
  with other libraries.

+ several other fixes and improvments for math/giacxcas:

- do not link cocoalib with the static libgmp (other binaries are linked
  against the dynamic one)
- fixes Fl::set_fonts for some badly registered fonts
- remove USE_GCC: a runtime has been done and it seems OK
- add USES=localbase to simplify the flags
- add 2 missing libraries (libecm and libmpf): unless explicitely
  disabled they are used
- Makefiles had been patched to install the in-line docs under
  $docdir => make programs and files coherent with that
- add a TEST_TARGET: all tests but 2 pass
- add USE_PERL5=run, because pgiac is a Perl script.

PR:		246049
Submitted by:	/me
Approved by:	yuri@ (maintainer)

math/giacxcas: Update 1.5.0-69 -> 1.5.0-87

Reported by:	portscout

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

math/giacxcas: Update 1.5.0-67 -> 1.5.0-69

Reported by:	portscout

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

math/giacxcas: Update 1.5.0-63 -> 1.5.0-67

Reported by:	portscout

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

math/giacxcas: Update 1.5.0-61 -> 1.5.0-63

math/giacxcas: Update 1.5.0-59 -> 1.5.0-61

Reported by:	portscout

math/giacxcas: Update 1.5.0-57 -> 1.5.0-59

Reported by:	portscout

math/giacxcas: Update 1.5.0-53 -> 1.5.0-57

Reported by:	portscout

math/giacxcas: Update 1.5.0-51 -> 1.5.0-53

Reported by:	portscout

math/giacxcas: Update 1.5.0-49 -> 1.5.0-51

Reported by:	portscout

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Update devel/readline to 8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine

math/giacxcas: Update 1.5.0-47 -> 1.5.0-49

Reported by:	portscout

math/giacxcas: Update 1.5.0-43 -> 1.5.0-47

Reported by:	portscout

math/giacxcas: Update 1.5.0-37 -> 1.5.0-43

Reported by:	portscout

math/giacxcas: Do not set INFO twice

math/giacxcas: Update 1.4.9-59 -> 1.5.0-37

Reported by:	portscout

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Install texinfo files (GNU info) into ${PREFIX}/share/info

After a discussion on the mailing list on moving manpages to
${PREFIX}/share/man for consistency with base where it is
installed in usr/share/man, it appeared the same should happen
to GNU info files which were installed under share in base and
not in ports.

Now texinfo is not in base on any of the supported version of FreeBSD
it is possible to proceed to this move and it is easier to do than
the manpage change.

Other benefit than consistency are less patching: all build tools but
cmake are expecting info files to be under share/info and cmake (patched here)
was having an exception for BSD so the patch makes FreeBSD case less
specific for them

Bump revision of all impacted ports

PR:		232907
exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17816

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

math/pari: Update 2.9.5 -> 2.11.0

Bump math/giacxcas

Reported by:	portscout

Update math/gsl to 2.5

PR:		229067

Update mpfr to 4.0.1 release and bump PORTVERSION of dependent ports.

math/giacxcas: Update to 1.4.9-59

Changelog:
https://www-fourier.ujf-grenoble.fr/~parisse/install_en#new

Reported by:	portscout

math/giacxcas: Update to 1.4.9-57

Port changes:
* Took maintainership
* Added to and sorted LIB_DEPENDS
* Added USES=ncurses
* Added PORTDOCS/PORTEXAMPLES
* Removed unnecessary links to docs/examples

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408

Update math/giacxcas to 1.2.3-55

seems to link just fine.

Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine

Mark BROKEN: fails to link

libtool: link: g++5 -shared -nostdlib /usr/lib/crti.o
/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/crtbeginS.o 
.libs/input_lexer.o .libs/sym2poly.o .libs/gausspol.o .libs/threaded.o
.libs/moyal.o .libs/maple.o .libs/ti89.o .libs/mathml.o .libs/misc.o
.libs/permu.o .libs/quater.o .libs/desolve.o .libs/input_parser.o
.libs/symbolic.o .libs/index.o .libs/modpoly.o .libs/modfactor.o .libs/ezgcd.o
.libs/derive.o .libs/solve.o .libs/intg.o .libs/intgab.o .libs/risch.o
.libs/lin.o .libs/series.o .libs/subst.o .libs/vecteur.o .libs/sparse.o
.libs/csturm.o .libs/tex.o .libs/global.o .libs/ifactor.o .libs/alg_ext.o
.libs/gauss.o .libs/isom.o .libs/plot.o .libs/plot3d.o .libs/rpn.o .libs/prog.o
.libs/pari.o .libs/cocoa.o .libs/unary.o .libs/usual.o .libs/identificateur.o
.libs/gen.o .libs/tinymt32.o .libs/first.o .libs/TmpLESystemSolver.o
.libs/TmpFGLM.o .libs/help.o  
-L/wrkdirs/usr/ports/math/giacxcas/work/CoCoALib-0.9950/lib
-L/wrkdirs/usr/ports/math/giacxcas/work/fltk-1.3.0/l
b -L/usr/local/lib -L/usr/local/lib/gcc5 -lcocoa -lpari -lgsl -lgslcblas -lintl
-lrt -lpthread -llapack -lblas -lgfortran -lpng -lmpfr -lgmp
-L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0
-L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/../../../../../x86_64-portbld-freebsd10.3/lib
-L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/../../.. -lstdc++ -lm
-lssp_nonshared -lc -lgcc_s
/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/crtendS.o
/usr/lib/crtn.o  -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5
-Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin
-fstack-protector -Wl,-rpath=/usr/local/lib/gcc5   -Wl,-soname -Wl,libgiac.so.0
-o .libs/libgiac.so.0.0.0
/usr/local/bin/ld: PARI_stack_limit: TLS definition in /usr/local/lib/libpari.so
section .tbss mismatches non-TLS reference in .libs/pari.o
/usr/local/lib/libpari.so: error adding symbols: Bad value
collect2: error: ld returned 1 exit status

Reported by:	pkg-fallout

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522

- Remove always-true OSVERSION condition

Approved by:	portmgr blanket

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Update to 1.2.2-57.

PR:		210796
Submitted by:	tkato432 yahoo com
Sponsored by:	Absolight

Deprecate ports broken for more than 6 months

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Mark a few ports BROKEN: unfetchable

Convert to USES=jpeg

- Add LICENSE_FILE
- Strip library

Bump portrevision after png update

- Drop @dirrm* from plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)

- Drop .la files, no dependees require them

Approved by:	portmgr blanket

Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr

math/giacxcas: fix compile on head

- Make the no cdrom entry match the string in LEGAL

PR:		189541
Submitted by:	han math jussieu fr

Multiple ports: reset maintainers
	Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)

When linking a library libA with a library libB using libtool, if libB.la
exists, libtool will add all libraries libB.la refers to (dependency_libs
field) to the linker command line and store them in the dependency_libs
field of libA.la.  So everything that subsequently links with libA will also
link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Fix build on 10.x

While here:

   * Stagify
   * stage-qa fixes: USE shebangfix desktop-file-utils

PR:		182431
Submitted by:	Han Frederic (maintainer)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with m)

Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

math/giacxcas: update to 1.1.0

- Update to 1.1.0 [1]
- Convert lib depends to new syntax
- USES gmake

PR:		ports/181906 [1]
Submitted by:	Han Frederic <han math.jussieu.fr> (maintainer)

Update math/gsl to 1.16 and adjust some dependent ports

- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)

Rectify USE_TEX to support both of teTeX and TeXLive.

TEX_DEFAULT:
	A knob to choose teTeX or TeXLive.  One can specify in /etc/make.conf.

USE_TEX:
	A knob for port developers.  Valid keywords are listed in
	bsd.tex.mk.

Remove *_DEPENDS from ports which depend on teTeX and add USE_TEX=tetex
instead to make migration to TeXLive easier.

- Convert USE_GETTEXT to USES (part 3)

Approved by:	portmgr (bapt)

- Update to version 1.0.0
- Update CocoaLib dependency version to 9950
- Use the PORTDOCS and PORTDATA macros in Makefile
- Trim Makefile header, define LICENSE (GPLv3)
- Perform miscellaneous cleanups while I am at it

PR:		ports/175143
Submitted by:	maintainer

- Force commit to fix ports/pr number
- Update to 0.9.8 from the author sources
- CONFLICTS aide-[0-9]* because of overlapping files bin/aide (also used by
security/aide) has been removed.

PR:             ports/169210
Submitted by:   HAN Frederic <han@math.jussieu.fr> (maintainer)