Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine

- Update math/octave to 4.4.1.
- Bump portrevision for all octave-forge-* ports.

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540

- In the log for r469170, I forgot to mention that I added help and
  help-tools to USE_QT4.
- I also forgot to mention Christoph Moench-Tegeder <cmt@burggraben.net>
  who told me these changes.

In this revision:

- Switch from QT4 to QT5.
- Bump portrevision.

Submitted by:	Adriaan de Groot <adridg@freebsd.org>
Obtained from:	https://reviews.freebsd.org/D15328

- Fixed error in which -qt4 is passed to QT tools.  It should be -qt=qt4.
- Set MKINFO in configure_args so that makeinfo works.
- Since plist changed, bump portrevision.

PR:		ports/228004
Submitted by:	Robert Cina <transitive@gmail.com>

Explicitely disable docs build as it fails when it's attempted (FreeBSD 11+)

perl ./doc/interpreter/mk-qthelp.pl octave.html
doc/interpreter/octave_interpreter && \
qcollectiongenerator -qt4 doc/interpreter/octave_interpreter.qhcp -o
doc/interpreter/octave_interpreter.qhc >/dev/null && \
rm -f doc/interpreter/octave_interpreter.qhcp
doc/interpreter/octave_interpreter.qhp
qcollectiongenerator: could not find a Qt installation of '4'

Reported by:	pkg-fallout
With hat:	portmgr

- Update octave to 4.4.0.
- Either bump portrevision or mark broken for octave-forge-* ports.
- Bump port revision for octave-forge.

Update the QScintilla2 ports to 2.10.4

math/suitesparse: Update 4.0.2 -> 5.2.0

Port changes:
* Change to DISTVERSION
* Update MASTER_SITES
* Change to LICENSE_COMB=dual
* Add LIB_DEPENDS
* Unbundle metis, made it a dependency
* Update do-build and do-install
* Update WWW

Bump 11 ports.
games/naev is marked broken because it depends on the no longer installed
library.

PR:		210579
Submitted by:	yuri
Submitted by:	pfg
Approved by:	maintainer timeout (maho@FreeBSD.org, 21 months)
Approved by:	maintainer timeout (fortran@FreeBSD.org, 45 days)

- Add Makefile.version to share version with ports depending on octave.

PR:		ports/226816
Submitted by:	Yuri Victorovich <yuri@freebsd.org>

- Update to 4.2.2.

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

- Fix build on armv6.

PR:		ports/223277
Submitted by:	mikael.urankar@gmail.com

- Link against osmesa.
- Bump portrevision.

- Make sure qscintilla links correctly to octave (otherwise the built in text
editor
  doesn't work in the GUI version).

- Make sure build doesn't use qt5 libraries/utilities.

PR:		ports/226246
Submitted by:	Ting-Wei Lan <lantw44@gmail.com>

Explicitely disable openmp, for some reasons configure enables it on
10.x amd64 (not other archs) and this causes fallout in some octave-forge
ports

With hat:	portmgr

- Update to 4.2.1.
- Maintainership to stephen@.

PR:		ports/225073
Submitted by:	Ben Lauwens <ben.lauwens@gmail.com>

Update QScintilla 2.10.2.

Upstream has renamed its libraries and we no longer need to patch
devel/qscintilla-qt5 to create a library whose name does not conflict with
devel/qscintilla's. However, the library names are different so we need to bump
PORTREVISION in several ports (the SOVERSION has changed too).

Thanks to antoine for the exp-run.

PR:		225928

math/octave: Set correct USE_LDCONFIG=

PR:		223690
Reported by:	joneum
Approved by:	maintainer timeout (2 weeks) rene (mentor)
Differential Revision:	https://reviews.freebsd.org/D13245

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Bump PORTREVISION to reflect print/gl2ps changes.

PR:		ports/218399 (based on)
Submitted by:	emaste

Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Revert r428758 and unbreak
The portmgr blanket doesn't cover breakages

Pointy hat:	sunpoet

- Use USES=makeinfo instead of hard-coded BUILD_DEPENDS
- Update RUN_DEPENDS: remove redundant LOCALBASE/bin

Approved by:	portmgr (blanket)

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Fix build after math/glpk update

Reported by:	pkg-fallout
PR:		211455

1. Some dependencies were added per QA advice.
2. updated to version 4.0.3
   deleted obsolete patch 'patch-libinterp-octave-value-ov-classdef'
   Java and GUI are now optional
   plist is now generated automatically
   revised dependencies

PR:		211291
Submitted by:	bsam (1), Alexander Sherikov (2)

math/octave: remove wrongly used PLIST_SUB from pkg-plist

PR:		210055
Submitted by:	Tobias Berner <tcberner@gmail.com>
Approved by:	maintainer timeout (7 weeks)

Fix build with libc++ 3.8.0, by disabling custom max_align_t definition

PR:		209692
Submitted by:	dim@
Approved by:	maintainer timeout (2 weeks)

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Forgot to add patches, and bump port revision

PR:		201737
Submitted by:	you.akira.noda@gmail.com
Also spotted by: stephen@

Update to 4.0.0

PR:		201737 (partially)
Submitted by:	you.akira.noda@gmail.com

Update PyQt4 to 4.11.4, SIP to 4.17 and QScintilla2 to 2.9.1.

Bring in some long overdue updates, some of which are required for us to
later land the PyQt5 ports.

One big change with this update is that the PyQt4 ports now install their
.sip files into share/py-sip/PyQt4 instead of share/py-sip. This way we do
not end up with directories like share/py-sip/QtCore, which are especially
confusing once PyQt5 lands and starts installing files with the same names.

Other noteworthy items:
- PORTREVISION has been bumped on ports depending on devel/qscintilla2
  because libqscintilla2.so's SOVERSION has changed.
- graphics/seexpr has been converted to USE_PYQT, as the file it used to
  define a build-time dependency on x11-toolkits/py-qt4-gui has moved.

Once again, big thanks to Tobias Berner <tcberner@gmail.com> and Guido Falsi
(madpilot@) for their initial work on these ports as part of the effort to
land PyQt5 into the tree (see D2910 in Phabricator for an earlier version of
the PyQt5 patch set).

PR:		205143

graphics/GraphicsMagick: Upgrade version 1.3.21 => 1.3.22

GraphicsMagick was just updated, but there was as newer, second
PR to upgrade it once more.  And again, the shared library version
has been bumped (haven't these guys heard of symbol versioning?)

While the INDEX references 114 users of GraphicksMagick, I'm going to
only bump the same 8 ports as yesterday.   The bump script appears to
be obsolete (still uses CVS!)

PR:		203547
Submitted by:	Walter Schwarzenfeld

graphics/GraphicsMagick: Upgrade version 1.3.20 => 1.3.21

The shared library versions changed, so bump all the ports that
depend on GraphicsMagick by default too.

PR:		200304
Submitted by:	ports fury

- Switch to options helpers
- While here, add some NO_ARCHes and couple missing PORT_OPTIONS=DOCS

Approved by:	portmgr blanket

- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight

Descriptions from bsd.options.desc.mk is used, and openblas is now default.

Moving the Octave icons to a directory which is not version specific (*).
Remove ATLAS knob, and bump portrevision.

Submitted by:	Jason Bacon (*)

* Update to 3.8.2
* OpenBLAS cleanup

Submitted by:	therry@ (openblas part)

- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

math/fftw3:
- Add USES=libtool and bump dependent ports
- Add INSTALL_TARGET=install-strip
- Remove PTHREAD_CFLAGS and PTHREAD_LIBS
- Use MAKE_CMD

- Switch graphics/GraphicsMagick to USES=libtool, drop .la files
- Bump dependent ports as .so version has changed
- Fix distinfo for graphics/cmg
- Fix shebang for graphics/vips

Approved by:	portmgr blanket

Update PyQt to 4.11.1, QScintilla to 2.8.3 and SIP to 4.16.2.

... And bump PORTREVISION on ports that depend on devel/qscintilla2 due to
the shlib version change.

This is brought to you by the KDE on FreeBSD team. Besides updating to newer
upstream releases, this commit also contains a lot of under-the-hood changes
to the PyQt/QScintilla/SIP ports. Their Makefiles had accumulated a lot of
cruft over time, so it was time for some summer cleaning:

- General, belated changes:
  * Use OPTIONS helpers wherever possible, stop including
    <bsd.port.options.mk> when not necessary, stop checking for
    ${PORT_OPTIONS:MDOCS} and ${PORT_OPTIONS:MEXAMPLES} when not necessary,
    add options such as DOCS and/or DEBUG where they were only checked for.

Update consumers of graphics/GraphicsMagick13 to use graphics/GraphicsMagick
instead, these two ports are now equal.
Bump PORTREVISIONs

Approved by:	portmgr (antoine)

* Better GUI support [1]
* fix pkg-plist [2]

Submitted by:	Jason Bacon <jwbacon@tds.net> [1]
                swills@ [2]

Update to 3.8.1

- Chase revision r353615 to math/qhull5.

Runtime fix: all the dynamically generated part of the plist was not packaged

With hat:	portmgr

- New LIB_DEPENDS syntax.
- USES=libtool tar:bzip2.
- Move some variable definitions in front of bsd.port.options.mk.
- Add DOCS option.
- Remove FreeBSD 6 support.

- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Finish stage support

Update to 3.8.0

PR:		185991
Submitted by:	Max Sterling <maxclsb@gmail.com>

Replace USE_FORTRAN with USES=fortran such that C/C++ code is built with
Clang/libc++ on FreeBSD 10.  This fixes a crash caused by the use of
libstdc++ while dependencies used libc++.

Approved by:	maho (maintainer)

A build fix with recent (?) version of texinfo.
Note that this cannot be reproduced in maho's tinderbox.

PR:		183338
Submitted by:	Mamoru Iwaki <1wkmmr@gmail.com>

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with m)

Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

Convert to new perl framework
Convert USE_GMAKE to USES

Add an explicit dependency on pkgconf

Approved by:	portmgr (bapt)

Unbreak for texinfo 5.1, patch was taken from Gentoo site.
Portrevision bumped.

> Octave-3.6.4 in Gentoo has the identical bug.
> https://bugs.gentoo.org/show_bug.cgi?id=465536
> Their texinfo.patch is here:
> https://465536.bugs.gentoo.org/attachment.cgi?id=347084

PR:		179105
Submitted by:	Chen Xie <xiechen@mail.ustc.edu.cn>

Update math/glpk to 4.52.1 and adjust dependent ports

- Update to 7.31.0
- Bump PORTREVISION for ftp/curl shlib change
- Add TEST_DEPENDS
- Convert to new options framework
- Adjust options:
  - Add COOKIES
  - Add CYASSL, NSS, POLARSSL, THREADED_RESOLVER, TLS_SRP [1]
  - Add GSSAPI and SPNEGO [2]
  - Remove KERBEROS4
  - Rename LIBIDN to IDN
  - Remove TRACKMEMORY [1]
- Sort option handler
- Add SLAVEDIRS: ftp/curl-hiphop
- Cosmetic change
- Cleanup Makefile header
- While I'm here, fix typo (PORTREVSION) in x11-wm/ede/Makefile

Changes:	http://curl.haxx.se/changes.html
PR:		ports/172325 (-exp run), ports/177369 (based on) [1]
Submitted by:	Hirohisa Yamaguchi <umq@ueo.co.jp> [1], hrs (via email) [2]
Exp run by:	miwi

- Do not remove directories not created by this port

Reported by:	pkg (DEVELOPER_MODE)

Update math/glpk to 4.50 and adjust dependent ports

Use USE_TEX.

Spotted by:	stephen

update math/glpk to 4.49, and adjust dependent ports

Approved by:	maho

Update to 3.6.4.

update glpk to 4.48 and adjust dependent ports

Accordingly bump portrevision as SuiteSparse is updated to 4.0.2.

Correct dependency of openblas.

Submitted by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>

Remove .1  from GraphicsMagick, as octave doesn't require
paticular version.

Submitted by:	Scott Bennett <bennett@cs.niu.edu>

Update PCRE to 8.32
Introduces the UTF-32 library pcre32
Bump PORTREVISION in dependent ports

update to 3.6.3

Feature safe: yes

- update png to 1.5.10

Update to 3.6.1.

Bump pcre library dependency due to 8.30 update

Fix link against libumfpack.
Bump port revision.

PR:             162988
Submitted by:   Jason Bacon <jwbacon@tds.net>
Feature safe:   yes

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

update to 3.4.3.
Feature safe:   yes

- update fftw3* to 3.3 [1], and adjust dependent ports
- make use of optimizations by default, where possible
(quad flavor to follow shortly, and mpi at a later date)

Suggestions and patches from:   ache, C. Burns, wen

- LIB_DEPENDS qhull -> qhull5
- Bump portrevision

PR:             ports/161089

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

Better pkg-plist generation, making octave and octave-forge more
orthogonal.

Discussion with: stephen@

- Bump PORTREVISION for science/hdf5-18 shlib change

- Add missing items in pkg-plist.
- Portlint.
- Bump portrevision.

Approved by:    maho (mentor) and maho (maintainer)

Update to 3.4.2.

Update to 3.4.1.

Add a make target called "check"
you can now check octave port by
$ make check
. [1]

Note: 10 tests failed on FreeBSD 8.1/RELEASE amd64.

Discussion with @tmacchant via twitter

Chase glpk shlib version bump.

Remove legacy dependency to science/hdf5,
and bump portrevision (may not be required, though.)

PR:             156940
Submitted by:   Stephen Montgomery-Smith <stephen@missouri.edu>