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Port details
mmdb2 C++ toolkit for working with macromolecular coordinate files
2.0.22 science on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.22Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-07 23:33:09
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
License: GPLv3 LGPL3
WWW:
https://launchpad.net/mmdb
Description:
MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats. MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4 suite. This project maintains a current stand-alone version of the library.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (46 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/mmdb2-2.0.22/catalog.mk
  3. /usr/local/share/licenses/mmdb2-2.0.22/LICENSE
  4. /usr/local/share/licenses/mmdb2-2.0.22/GPLv3
  5. /usr/local/share/licenses/mmdb2-2.0.22/LGPL3
  6. include/mmdb2/hybrid_36.h
  7. include/mmdb2/mmdb_atom.h
  8. include/mmdb2/mmdb_bondmngr.h
  9. include/mmdb2/mmdb_chain.h
  10. include/mmdb2/mmdb_cifdefs.h
  11. include/mmdb2/mmdb_coormngr.h
  12. include/mmdb2/mmdb_cryst.h
  13. include/mmdb2/mmdb_defs.h
  14. include/mmdb2/mmdb_ficif.h
  15. include/mmdb2/mmdb_io_file.h
  16. include/mmdb2/mmdb_io_stream.h
  17. include/mmdb2/mmdb_machine_.h
  18. include/mmdb2/mmdb_manager.h
  19. include/mmdb2/mmdb_mask.h
  20. include/mmdb2/mmdb_math_.h
  21. include/mmdb2/mmdb_math_align.h
  22. include/mmdb2/mmdb_math_bfgsmin.h
  23. include/mmdb2/mmdb_math_fft.h
  24. include/mmdb2/mmdb_math_graph.h
  25. include/mmdb2/mmdb_math_linalg.h
  26. include/mmdb2/mmdb_math_rand.h
  27. include/mmdb2/mmdb_mattype.h
  28. include/mmdb2/mmdb_mmcif_.h
  29. include/mmdb2/mmdb_model.h
  30. include/mmdb2/mmdb_root.h
  31. include/mmdb2/mmdb_rwbrook.h
  32. include/mmdb2/mmdb_selmngr.h
  33. include/mmdb2/mmdb_seqsuperpose.h
  34. include/mmdb2/mmdb_symop.h
  35. include/mmdb2/mmdb_tables.h
  36. include/mmdb2/mmdb_title.h
  37. include/mmdb2/mmdb_uddata.h
  38. include/mmdb2/mmdb_utils.h
  39. include/mmdb2/mmdb_xml_.h
  40. lib/libmmdb2.so
  41. lib/libmmdb2.so.0
  42. lib/libmmdb2.so.0.0.0
  43. libdata/pkgconfig/mmdb2.pc
  44. @owner
  45. @group
  46. @mode
Collapse this list.
Dependency lines:
  • mmdb2>0:science/mmdb2
To install the port:
cd /usr/ports/science/mmdb2/ && make install clean
To add the package, run one of these commands:
  • pkg install science/mmdb2
  • pkg install mmdb2
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mmdb2
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1651333778 SHA256 (mmdb2-2.0.22.tar.gz) = a9646933ce9f34633e1ae4901f2383af0e5318d6490851328f5b6aa06195ab51 SIZE (mmdb2-2.0.22.tar.gz) = 737837
Packages (timestamps in pop-ups are UTC):
mmdb2
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.0.222.0.222.0.202.0.222.0.22-2.0.20-
FreeBSD:13:quarterly2.0.222.0.222.0.222.0.222.0.222.0.222.0.222.0.22
FreeBSD:14:latest2.0.222.0.222.0.222.0.222.0.222.0.22-2.0.22
FreeBSD:14:quarterly2.0.222.0.22-2.0.222.0.222.0.222.0.222.0.22
FreeBSD:15:latest2.0.222.0.22n/a2.0.22n/a2.0.222.0.222.0.22
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
This port is required by:
for Libraries
  1. science/clipper
  2. science/libccp4
  3. science/libssm

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/coot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options:
No options to configure
Options name:
science_mmdb2
USES:
gmake libtool
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.0.22
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.22
30 Apr 2022 16:03:26
commit hash: 37799bea69e65a69e41e217aa8446d50b1cb9c57commit hash: 37799bea69e65a69e41e217aa8446d50b1cb9c57commit hash: 37799bea69e65a69e41e217aa8446d50b1cb9c57commit hash: 37799bea69e65a69e41e217aa8446d50b1cb9c57 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
science/mmdb2: Update 2.0.20 -> 2.0.22

Reported by:	portscout
2.0.20
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.0.20
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
2.0.20
13 Jan 2020 03:30:45
Revision:522849Original commit files touched by this commit		 yuri search for other commits by this committer 
science/mmdb2: Update 2.0.19 -> 2.0.20

Reported by:	portscout
2.0.19
15 Dec 2018 20:45:04
Revision:487545Original commit files touched by this commit		 yuri search for other commits by this committer 
science/mmdb2: Update 2.0.16 -> 2.0.19

Also fix WWW.

Reported by:	portscout
2.0.16
07 Jul 2018 23:40:51
Revision:474144Original commit files touched by this commit		 yuri search for other commits by this committer 
science/mmdb2: Update 2.0.12 -> 2.0.16
2.0.12
07 Jul 2018 23:32:57
Revision:474143Original commit files touched by this commit		 yuri search for other commits by this committer 
New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate
files

Number of commits found: 9
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