| Port details |
- py-atomium Molecular modeller and file parser
- 1.0.11_3 science
 =2      1.0.11_2Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2022-10-04 04:09:29
- Last Update: 2025-03-08 04:05:21
- Commit Hash: 06a08e6
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
- Also Listed In: biology python
- License: MIT
- WWW:
- https://atomium.bio/
- Description:
- atomium is a molecular modeller and file parser, capable of reading from and
writing to .pdb, .cif and .mmtf files.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}atomium>0:science/py-atomium@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-atomium/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-atomium
- pkg install py311-atomium
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-atomium listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-atomium
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1664851734
SHA256 (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = f26fec07ab7777032e2f829e4338021543f5ccbd76f59dc47c12decc9b1ebe88
SIZE (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = 21454532
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-coveralls>0 : devel/py-coveralls@py311
- py311-msgpack>=0.6.1 : devel/py-msgpack@py311
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-paramiko>0 : security/py-paramiko@py311
- py311-requests>0 : www/py-requests@py311
- py311-rmsd>0 : science/py-rmsd@py311
- py311-sphinx>0 : textproc/py-sphinx@py311
- py311-sphinx_rtd_theme>0 : textproc/py-sphinx_rtd_theme@py311
- py311-tqdm>0 : misc/py-tqdm@py311
- py311-valerius>=0.2 : biology/py-valerius@py311
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- Test dependencies:
-
- py311-pytest>=7,1 : devel/py-pytest@py311
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-coveralls>0 : devel/py-coveralls@py311
- py311-msgpack>=0.6.1 : devel/py-msgpack@py311
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-paramiko>0 : security/py-paramiko@py311
- py311-requests>0 : www/py-requests@py311
- py311-rmsd>0 : science/py-rmsd@py311
- py311-sphinx>0 : textproc/py-sphinx@py311
- py311-sphinx_rtd_theme>0 : textproc/py-sphinx_rtd_theme@py311
- py311-tqdm>0 : misc/py-tqdm@py311
- py311-valerius>=0.2 : biology/py-valerius@py311
- python3.11 : lang/python311
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- science_py-atomium
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 4
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.0.11_3
08 Mar 2025 04:05:21
 |
Charlie Li (vishwin) |
python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removal
Any missed ports, feel free to bump.
Any ports that need setuptools at runtime can have the devel/py-setuptools
manually added back to RUN_DEPENDS, but understand that this practice
is deprecated; see CHANGES for details. |
1.0.11_2
20 May 2024 10:33:03
|
Vsevolod Stakhov (vsevolod) |
security/libsodium: update to 1.0.19, bump dependent ports
PR: 278259
Reported by: Andrey Korobkov <alster-vinterdalen.se> |
1.0.11_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
1.0.11
04 Oct 2022 04:06:22
|
Yuri Victorovich (yuri) |
science/py-atomium: New port: Molecular modeller and file parser |
Number of commits found: 4
|
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