science/py-h5py: Update to 3.13.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/tree/master/docs/whatsnew
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.12.1

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/tree/master/docs/whatsnew
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.12.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/tree/master/docs/whatsnew
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.11.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/tree/master/docs/whatsnew
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Convert to USE_PYTHON=pep517

- Bump PORTREVISION for package change

science/py-h5py: Update to 3.10.0

- Update WWW and clean up pkg-descr

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/tree/master/docs/whatsnew
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: unbreak packaging with python!= 3.9

pkg-static: Unable to access file
/wrkdirs/usr/ports/science/py-h5py/work-py310/stage/usr/local/share/doc/py310-h5py/whatsnew/3.10.rst:No
such file or directory

Versioned release notes files shouldn't be covered with %%PYTHON_VER%% macro.

No PORTREVISION bump, python 3.9 is a default version and package content isn't
changed.

Reported by:	poudriere failure
Approved by:	portmgr blanket (trivial fix)

science/py-h5py: Update to 3.9.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.9.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

science/py-h5py: Update to 3.8.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.8.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

science/py-h5py: Convert to USE_PYTHON=pytest

science/py-h5py: Update to 3.7.0

- Update version requirement of TEST_DEPENDS

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.7.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.6.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.6.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.5.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.5.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update version requirement of BUILD_DEPENDS

science/py-h5py: Update to 3.4.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.4.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.3.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.3.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

Mk: switch PYTHON_REL to 5 digits to support python 3.10.x

PR:		255013
Differential Revision:	https://reviews.freebsd.org/D29418
Exp-run by:	antoine
Approved by:	wen@, no objection from python@ or portmgr@

science/py-h5py: Remove PYNUMPY

science/py-h5py: Update to 3.2.1

- Update USES=python of dependent ports

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.2.rst

Remove # $FreeBSD$ from Makefiles.

Update to 3.1.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.1.rst

Drop python 2.7 support from a few ports

With hat:	portmgr

Update to 2.10.0

- Sort PLIST

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/2.10.rst

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Update to 2.9.0

- Convert PORTDOCS and PORTEXAMPLES to PLIST entries

Changes:	https://github.com/h5py/h5py/releases

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine

Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight

Update to 2.8.0

Changes:	https://github.com/h5py/h5py/releases

Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Update to 2.7.1

- Change MASTER_SITES to CHEESESHOP
- Sort BUILD_DEPENDS
- Update pkg-descr
- Add PyPI and GitHub repository to WWW
- Take maintainership

science/py-h5py: Update to 2.7.1

Additional port changes:
* Changed to DISTVERSION
* Grouped USExx
* Added USE_PYTHON=concurrent (for docs, examples)
* Removed patching (in post-patch and files/)
* Added stripping
* Updated WWW

Approved by:	tcberner (mentor, implicit)

Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj

Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the

Update to 2.7.0

PR:		219754
Submitted by:	xmj (maintainer)

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

- Remove bogus NO_ARCH: this module installs .so files
- Cosmetic fixes

Approved by:	portmgr blanket

Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)

Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj

science/py-h5py: 2.5.0 -> 2.6.0

PR:		209630
Submitted by:	Johannes Jost Meixner <xmj@chaot.net> (maintainer)

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 2.5.0
- Switch to options helper
- Switch to do-test

PR:		205137
Submitted by:	maintainer
Approved by:	mat (mentor)
Differential Revision:	D4507

- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Update ports in the s* categores to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

science/py-h5py: upgrade to 2.4.0

- upgrade to 2.4.0

Differential Revision:	https://reviews.freebsd.org/D1456
Approved by:	koobs (mentor)

Update "BSD" license in science category

- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

science/py-h5py: Upgrade to 2.3.0

- Update to 2.3.0
- Remove BROKEN mark

Approved by:	swills (mentor)

Mark BROKEN: Does not build

cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include
-I/usr/local/include/python2.7 -c h5py/h5fd.c -o
build/temp.freebsd-10.0-RELEASE-p3-amd64-2.7/h5py/h5fd.o
In file included from h5py/h5fd.c:259:
In file included from h5py/api_compat.h:21:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "          "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
h5py/h5fd.c:857:39: error: use of undeclared identifier 'H5FD_MPIPOSIX'
  __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1))
{__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto
__pyx_L1_error;}
                                      ^
1 warning and 1 error generated.
error: command 'cc' failed with exit status 1
*** Error code 1

Reported by:	pkg-fallout

- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

science/py-h5py: update to 2.2.1

- Update to 2.2.1
- Add EXAMPLES

PR:		ports/184746
Submitted by:	maintainer

science/py-h5py: update to 2.2.0

- Update to 2.2.0
- Add LICENSE (BSD)
- Add DOCS
- Pass maintainership to submitter

PR:		ports/183519
Submitted by:	Johannes Jost Meixner <xmj chaot.net>
Approved by:	maintainer (timeout, 2 weeks, 3 times)

- Update to 2.1.1
- Remove leading article from COMMENT
- Use default dependency for science/hdf5-18
- Add patch

PR:		ports/181483
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	wg (mentor)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

science/py-h5py: Add OPTION support for HDF5 1.8

- Add OPTION to use science/hdf5-18 instead of science/hdf5

PR:		ports/179572
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	maintainer timeout (8 weeks)

 - remove MD5

- Add py-numpy into RUN_DEPENDS

PR:             ports/143419
Submitted by:   TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)

- Update to 1.2.1

PR:             ports/138984
Submitted by:   wenheping@gmail.com(myself)
Approved by:    maintainer,     jadawin(co-mentor)
Feature safe:   yes

Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5
library.

PR:             ports/136096
Submitted by:   TAOKA Fumiyoshi