Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_1 0.9.4_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-12-07 15:09:06

License: MIT

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_17 14.9.20210423_17Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2023-12-07 15:09:06

Also Listed In: perl5

License: PD

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

py-pymol OpenGL-based molecular visualization system

2.5.0.97_2^* 2.5.0.97_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-10-19 07:15:40

Also Listed In: python science

License: PyMOL

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymol>0:science/py-pymol@${PY_FLAVOR}

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.5.1_2 2.5.1_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-12-07 15:09:06

License: MIT

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.15.0_2 0.15.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-12-07 15:09:06

License: MIT

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.19.1_9 0.19.1_9Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-12-07 15:09:06

License: MIT

Dependency lines:

• unikmer>0:biology/unikmer