science/py-scipy: mark as PIE_UNSAFE (+)

Reported by:	bulk -t

Approved by:	portmgr (blanket)

Sponsored by:	Future Crew, LLC

science/py-scipy: Remove unnecessary substitution

science/py-scipy: Fix build with Clang 19

PR:		280716
Obtained
from:	https://github.com/scipy/scipy/commit/ab7d08c6148286059f6498ab5c3070268d13cbd9

science/py-scipy: Revert f24227e0c8ae1d8053448413e07b446ca1df6aa9

science/py-scipy: Fix build with Clang 19

PR:		280716
Obtained
from:	https://github.com/scipy/scipy/commit/ab7d08c6148286059f6498ab5c3070268d13cbd9

*/*: bump PORTREVISION after the upgrade to OpenBLAS

Revert "science/py-scipy: update 1.11.1 → 1.12.0"

This reverts commit 6b7a258af89199f12214268c416d69bae7453b80.

science/py-scipy: update 1.11.1 → 1.12.0

PR:	277826

*/*: chase the upgrade of BLAS / LAPACK to 3.12.0

PR:		275860

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

science/py-scipy: bump minimum Python to 3.9

Python 3.8 is no longer supported.

Reported by: Dani I
PR: 272347

science/py-scipy: Update to 1.11.1

PR:		272347
Reported by:	wen@
Exp-run by:	antoine@

science/py-scipy: Relax USES=python

PR:		270103
Reference:	https://github.com/scipy/scipy/blob/v1.10.0/setup.py#L455

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

science/py-scipy: Update 1.10.0 → 1.10.1

PR:		270602
Approved by:	python@ (maintainer's timeout; 19 days)

science/py-scipy: Update to 1.10.0

PR:		268949
Reported by:	wen@
Exp-run by:	antoine@

*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt

science/py-scipy: fix packaging with PYTHON_DEFAULT!=3.9 (+)

Reported by:	poudriere bulk -t fallout
Approved by:	portmgr blanket

science/py-scipy: Update to 1.9.2

Use the HTML format doc of 1.9.2, instead of PDF format file of 1.8.x
  (there is no PDF doc file since 1.9.0)
PR:		267084
Reported by:	wen@
Exp-run by:	antoine@

science/py-scipy: Update to 1.9.1

PR:		266332
Reported by:	wen@
Exp-run by:	antoine@

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/py-scipy: Update to 1.9.0

PR:		265716
Reported by:	wen@
Exp-run by:	antoine@

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

science/py-scipy: Update to 1.8.1

PR:		264163
Reported by:	wen@
Exp-run by:	antoine@

science/py-scipy: Update to 1.8.0

- Add test target
PR:		262307
Reported by:	wen@
Exp-run by:	antoine@

science/py-scipy: fix dependency

Fix dependence on devel/py-pythran

PR:		259777
Submitted by:	Michael Glaus

science/py-scipy: Update to 1.7.1

PR:		259584
Reported by:	wen@
Exp-run by:	antoine@

science/py-scipy: Add CPE information

Approved by:    portmgr (blanket)

science/py-scipy: Fix required python version

scipy dropped support for 3.6 as of 1.6.0:

https://github.com/scipy/scipy/commit/0a4f408d9bd560f9a379d2e33b136b93f3583042

PR:		256083
MFH:		2021Q2

Remove # $FreeBSD$ from Makefiles.

science/py-scipy: Update 1.5.4 -> 1.6.0

science/py-scipy: fix build on GCC architectures

/usr/local/lib/python3.7/site-packages/pybind11/include/pybind11/detail/common.h:65:6:
error: #error pybind11 requires gcc 4.8 or newer

MFH:		2021Q1

science/py-scipy: Remove the recently added USES=blaslapack:openblas because
LIB_DEPENDS=libblas.so:math/blas provides blas

It does build with libblas.so:math/blas, but doesn't with blaslapack:openblas.

PR:		251718
Reported by:	thierry
Approved by:	python (correction of the previous recent commit r559036)

scipy 1.5.4 is only compatible with python 3.6+

Reported by:	pkg-fallout

science/py-scipy: Update 1.2.2 -> 1.5.4

PR:		251718
Approved by:	python (maintainer's timeout; 14 days)

science/py-scipy: Unbreak build with GCC 10

scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaitr.f:666:35:

  383 |             call svout (logfil, 1, rnorm, ndigit,
      |                                   2
......
  666 |             call svout (logfil, 2, rtemp, ndigit,
      |                                   1
Error: Rank mismatch between actual argument at (1) and actual argument at (2)
(scalar and rank-1)
scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaitr.f:737:39:

  383 |             call svout (logfil, 1, rnorm, ndigit,
      |                                   2
......

Revert r524969 and unbreak bulk -a

With hat:	portmgr

math/py-scipy: Update to version 1.4.1

Major changes since version 1.2.2:
https://github.com/scipy/scipy/releases/tag/v1.4.1
https://github.com/scipy/scipy/releases/tag/v1.4.0
https://github.com/scipy/scipy/releases/tag/v1.3.0

Approved by:	python (swills)
Differential Revision:	https://reviews.freebsd.org/D23447

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Update to 1.2.2

Changes:	https://github.com/scipy/scipy/releases
PR:		238965
Exp-run by:	antoine

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

- Update to 1.2.0

PR:		234320
Submitted by:	wenheping2000@hotmail.com
Exp-run by:	antoine@

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Update MASTER_SITES

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

- Update to 1.1.0

PR:		228257
Submitted by:	wen@(myself)
Exp-run by:	antoine@

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Simplify Makefile

- Use post-patch: instead of post-extract:
- Silence patch messages
- Install scipy-ref-PORTVERSION.pdf from DISTDIR directly

Update WWW

Remove dependency on swig

I can't find any direct call to the swig binary in the code meaning
having swig as a run time dependency should not be a requirement

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

- Fix build with gcc5

PR:		218780

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

- Update to 0.19.0

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

- Update to 0.18.1

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 0.16.1
- Add CHEESESHOP to MASTER_SITES
- Add LICENSE_FILE

Changes:	https://github.com/scipy/scipy/releases

- Strip shared library
- Bump PORTREVISION for package change

- Update to 0.16.0
- Sort USE_PYTHON
- Convert to new options target helper
- Cosmetic change

Changes:	https://github.com/scipy/scipy/releases

- Cleanup Makefile
- Bump PORTREVISION for dependency changes in r383198 and r383223

As noted by thierry@ in D2086, scipy inherits blas library to use from numpy
(via site.cfg).  So remove unused OPTIONs from here.
Remove check for static ATLAS lib because now ATLAS always builds
static version.
Remove obsoleted malloc.h --> stdlib.h conversion.

Remove unused deps:
I see no reference for djbfft in the code; I assume it is obsoleted.

fftw3: according to http://www.scipy.org/scipylib/building/linux.html
---------
Because of license, configuration, and maintenance issues support for FFTW was
removed in versions of SciPy >= 0.7 and NumPy >= 1.2
---------

- Update to 0.15.1
- Switch to USES= blaslapack

Differential Revision:	https://reviews.freebsd.org/D1579
Reviewed by:	thierry

Fix build after r369447

Patch by Thierry Thomas <thierry@FreeBSD.org>

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

- Pass maintainership to python@

- Use version-coded PDF docs [1]
- Reset maintainer to port@

PR:		193204 [1]
Submitted by:	John W. O'Brien <john@saltant.com> [1]

- Enable concurrent installation support for different python versions
- Remove LATEST_LINK and the usage of math/py-numpy's options - both do not
  seem to have any value for the port

PR:		192893
Submitted by:	myself
Approved by:	wen@ (maintainer)

math/fftw3:
- Add USES=libtool and bump dependent ports
- Add INSTALL_TARGET=install-strip
- Remove PTHREAD_CFLAGS and PTHREAD_LIBS
- Use MAKE_CMD

Modernize python

Fix packaging with pkg-install

- Fix plist when define DOCS=off

PR:		190642
Reported by:	john@saltant.com

- Stage support
- Update to 0.14.0

PR:		190338
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>

- Update LICENSE

Approved by:	portmgr (blanket)

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Update to version 0.13.3.

maintainer timeout.

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

- Fix distinfo

Spotted by:	olgeni@ (Thanks!)

- Update to 0.13.1

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

- Update to 0.12.1

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

- Take maintainership

- update to 0.12.0

- let it build with python3 too

Both python2 and python3 are supported according to official
documentation and setup.py

PR:		180465
Submitted by:	nwhitehorn

NOPORTDOCS -> PORT_OPTIONS:MDOCS.

- Reset maintainer due to fatal email bounce

Reported by:	portscout

- update to 0.11.0
- trim Makefile header

while here:
- add license (BSD)
- limit python version to 2.x (doesn't builds with 3.x)
- remove shlib versions to fix some of porlint warnings
- update distinfo for user reference

PR:		172179
Submitted by:	wen
Approved by:	maintainer timeout (2 weeks+)
Feature safe:	yes

- Remove automatic dependency to SuiteSparse; use OPTIONS instead
- Change to new OPTIONS style
- Add RUN_DEPENDS on py-nose

PR:		ports/171349
Submitted by:	Li-Lun Wang <llwang@infor.org> (maintainer)
Reported by:	A.J. Kehoe IV (Nanoman)

- Update to 0.10.1

PR:             167223
Submitted by:   wen@ (myself)
Approved by:    maintainer(timeout, >=30 days)

- Update to 0.10.0

PR:             162893
Submitted by:   Gereon Kaiping <kta1c10!gereon@linta.de>
Reviewed by:    "Li-Lun Leland Wang" <llwang@infor.org> (maintainer)
Feature safe:   yes

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

- add run time dependency on py-scipy

PR:             ports/161472
Submitted by:   Sergey Svishchev <svs@ropnet.ru>
Approved by:    "Li-Lun \"Leland\" Wang" <llwang@infor.org>
Approved by:    bapt,sahil (mentors, implicit)

- update fftw3* to 3.3 [1], and adjust dependent ports
- make use of optimizations by default, where possible
(quad flavor to follow shortly, and mpi at a later date)

Suggestions and patches from:   ache, C. Burns, wen

- Move to py25 or above
- While here kick md5 support

- Update to 0.8.0

PR:             ports/151233
Submitted by:   Li-Lun Wang (Leland Wang) <llwang@infor.org> (maintainer)

- Update to 0.7.2

PR:             ports/146008
Submitted by:   Wen Heping (myself)
Approved by:    maintainer

- Update to 0.7.1
- Change the dependence to fftw3 from fftw2
- Remove the unnecessary dependence

PR:     ports/138630
Submitted by:   Wen Heping<wenheping@gmail.com>
Approved by:    maintainer,     miwi(mentor)
Feature safe:   yes